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54-1955-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9952583 [Map]; Strand: w
      • AT1G28360.1 - [+] show detail - ERF domain protein 12
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 54-1955-1 - 5-prime edge 
    AATAAAGATG GATATAGCGG CGCCGTTTTG CCTACTTTTC TATACGGCGC 
    CGTTTGAGAC CACTTTCGGT GGAACTACTT TAGTTTCTTT TTTTAGCAAA 
    TAGTATCTTT TTGTTAGAGT TAGTAGACNT TGTTTTTATA TTTAATCCTT 
    CTTTTGTTCG TTATGTAAGA GTCGGAGATC GATTGTTGTT GTGAGATCCA 
    TATGTTGCGG AAAAAACAAG AAACTTCTTA ATTAGCAACA CAAAAACTTA 
    ACAACGTCTG AACGTGGATC TAATGATATG TTTGTGGATC GTGTTACGAC 
    CGTCGCTTAT GTCGGTTTCG AGGGGGTTTT AAAAATCTTA TCGTATTCTA 
    TGGCGTGTCG TGAAGTACGG ACTGACTTGT GCAGCTCTTT GCTTTGCTAG 
    TGTCCTGTTT GACTCACGCG CCCCTCTCTT AAATCACGAC AAAAGACGGA 
    CTGAGAAAAG AAGGAAACAA ACAAAAGAGA TAGAGACTAA TGAGAGACGT 
    AAATGCTGAG CAAGCGTGTG AGTTTGGACT GGCTTATTCA CTTACGGACA 
    AGATATGTGT ATTATGAGTC TTGAGTTTGT AAATAAATTG TATTTTTTTA 
    TTTATTTTGA AAATTTTCAT ATGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9952464 [Map]; Strand: w
      • AT1G28360.1 - [+] show detail - ERF domain protein 12
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1955-1 - 3-prime edge 
    TCTTTATTTG TTTTCAAAGC CAAAGCGGCG GAGGCTCGTT GAGGTCAATG 
    GCTAAGCCAC GTCTCACCGT AACAGGGGAA GGAGAAGAAT T

AT1G28360.1

Model type
Protein coding
Short Description
ERF domain protein 12
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
Computational Description
ERF domain protein 12 (ERF12); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 4 (TAIR:AT3G15210.1); Has 5550 Blast hits to 5447 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 5541; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR