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54-1765-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3140929 [Map]; Strand: w
      • AT1G09700.1 - [+] show detail - dsRNA-binding domain-like superfamily protein
        Distance: -576; Region: promoter
      • AT1G09710.2 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G09710.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-1765-1 - 5-prime edge 
    CTTTNGATAA AACTAACAAA ATCGGTTATA CGATAACGGT CGGTACGGGA 
    TTTTCCCATC CTACTTTCAT CGCGAGTACT CTCCACGCGC TTCAACAGTC 
    GTGACCATCT TCTTCTCCGA TCGTCTTCAC CGGTTTTCTT GGGCATTCCC 
    TCGTGCAGTA AGTCTCTCTC GTTTCGTTTC GTCTATAACT CCCACGGGTT 
    TTGGTGAAAT TTGATTCCTT TGTCCTGTNC CCTGCAGAAT TGTTGCAATA 
    AATACGACGA AGATGGTTGC GAATAATAAT ACTAGTAGCA ATCGCAGGAA 
    GAGACTCATT ACTGAAGGCG ACATCGCCAC TCTTTTGCTG AGGTAAAAAT 
    ATCTCCTTTT TTGTNNNCTN TTTCCGAAAA CGTAAGTGGA TTTGGGTGAA 
    GANAGCGTGG GGNTTTTGAT TTATTGACGC AGNNGTGATA TGGATACGAT 
    GCCGNCAATG CTANGGGAGA NANCTNNNGG GGCCGCNANG AANANTTACT 
    TTTTTGCNTC GNNANAANAA AACGNNNGGG NGNNNTTTCT NATAANAAAN 
    ACCGNNGGGN NANCTTTTNG GGNNAAAAAN NNANCNGGGG GGGNGGGNNG 
    TNTTTTTTAA NANNAAGGCC CTCCCNTCNG GGGGNNANNG AAAGAGNNTC 
    CCCTCCCNNN GNAAAATNNT NGGGGNNTTN AAGGTNGGGG GGGGGGNGGG 
    GGGGNAAAAA ANNNCNCNTG GNTTATTNNA GNAAAAANNA GGGGGNTTTT 
    TTTNNAGGNG GGNGCTTNNT TGNNGGGNNA AANNCNNANA AN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3140877 [Map]; Strand: w
      • AT1G09700.1 - [+] show detail - dsRNA-binding domain-like superfamily protein
        Distance: -524; Region: promoter
      • AT1G09710.2 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G09710.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-1765-1 - 3-prime edge 
    CGTGGCAGAG GTGTTTCGGA AGAGAGAAGA AAAAAAAGGA ACGAAAAGGA 
    AGGTGGTAAA TTCGACTATT ATTATTCTAC GCTTATCAGA AGCGAAAAAT 
    ATGGGCTCAA ATATNTTTCT TTTCTGGTAA AGGGATATAG GATCAAGTGG 
    GCTCAAATAT GGGCTCAAAT ATTTTTCTTT TCTGTTAAGG GACATAGGCT 
    CAAGTGGGCT CAAATATGGG CTCAAATTGT TTTTATTTTT TATTAAACGG 
    TTATTATCAT TATTGATGTT TACTTGGAGA ACAAATTAAT TATTTGTGAA 
    TACAAAAACT GTGTGAATAT AACAAAGGGA TTACTAGTGA ATAAAGTTAG 
    CCATAAAAAG GTTAATCAAT TGTGGATATA TACATTAGTT AACTACATAT 
    GAAATACGAA ATTAGACTAT ATGTAATTAG TTTTTTTAAA ATTAAATTAA 
    ATATTTCAAA GATAAAAACA TTTTACTTTC ATANAATATT CACAAGTAAA 
    TTATATTTAT GGAAAATTTG ACCAAAAAGG TAAATTTATG GAATATAATA 
    TAATTTATAT AGGTTTGAAA TTAAATTCAA TATTAACATT TGTAACATAA 
    CAATTAAGAA CCACCCTTTC GTTTGCCCTT TAGAAAAAAA CCAAAAATAA 
    AAATCAGTAA AGAGGAAGGA AGTCGAGGGG AGAAGGTTTT TGGGTGAANA 
    ANAA

AT1G09700.1

Model type
Protein coding
Short Description
dsRNA-binding domain-like superfamily protein
Curator Summary
Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin.
Computational Description
HYPONASTIC LEAVES 1 (HYL1); CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 2 (TAIR:AT2G28380.1); Has 992 Blast hits to 893 proteins in 320 species: Archae - 14; Bacteria - 506; Metazoa - 117; Fungi - 6; Plants - 270; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09710.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G58220.1); Has 2083 Blast hits to 515 proteins in 153 species: Archae - 0; Bacteria - 81; Metazoa - 329; Fungi - 153; Plants - 69; Viruses - 0; Other Eukaryotes - 1451 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09710.2

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G58220.1).
Link
InterPro Scan - TAIR