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54-1640-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22788554 [Map]; Strand: w
      • AT1G61700.1 - [+] show detail - RNA polymerases N / 8 kDa subunit
        Distance: 221; Region: intergenic
      • AT1G61710.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 305; Region: intergenic
    Flanking Genome Sequence: 54-1640-2 - 5-prime edge 
    AACAATTTGA ATGGAGCTCC CATTTTATAA CCGGAGAATA TCAAAGTTTT 
    TTAGTTACAA GTGGTTGTAT TAATTCAAGG AAACCATTTA ACAAAAGAAA 
    TATAAATATT TATATTAAAT ATACACTATA ATTAGTTGAA TATATATTTA 
    TTTTGGATCA AATGTTTATT AAGATATATT TTTATTATAA AAATTTATTC 
    TGAAATATGT TTATTGAACA ATATACTGAA CTTAACAAAC CAAGGAGACT 
    TTTTTTATTT TATTTTTTTT CAAACACAAA CCAAGGAGAC AAATATGAAG 
    AAAACAAATT ACATTTGAAT AGAGAGGTAG AGCTATATAA CTCACTGAAT 
    GCTTGGAAAT ATTGTCTATT AGTCTATTAC AGATTAAGAT TTTCTAAAAG 
    AATTTGAGCC CGCTGAACCC AGAATTTGAG AGTTTGGCTT AGACTCAAAT 
    TCGAGTTTTT ACCTAGTACG CATTCAATAT GGAAAATGGT GCAGCACTCA 
    ACGCACCAAT AGAACACTTT TGTGTTTNGN GTCTCTTAAA TTACGTTCAC 
    ATACTTCGCA CCAATCTTTT TCACGGACCT CTTCTTNCCA TATAGCTGTG 
    AGAAAGTGTT TGNCATGTTC ATACCTTGCT CTATANGGTA ATGTAGCACA 
    CTTCATACAA ACAATAAAAT CACATTTGAT GCATTTAATT GATTATGACG 
    N

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22788433 [Map]; Strand: w
      • AT1G61700.1 - [+] show detail - RNA polymerases N / 8 kDa subunit
        Distance: 100; Region: intergenic
      • AT1G61710.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 426; Region: intergenic
    Flanking Genome Sequence: 54-1640-2 - 3-prime edge 
    GTTTTTATGT GCTCTGTTCT CATTACCAAT TTGATATCGT ACAAAAAGAG 
    CTGCTTCCTA CTCGTGATCT AGATTGTAGA TTTGAACCTT ATCAAATGTG 
    TGATCTTTAC TATTTATCAG GATTAGATTA CCAAAAACAA ATCAATAGAT 
    GATGACTCTA CAGGCTTGAG CTTTATTTTT GGCTCGAAAA ATTGTCTAGA 
    TTTCTAAAAC CGAACAAGAA CATCAGAAAA CATTGAAATA TCAACATTCC 
    TAGTTATAAA TTAAACCAAA ATTTCTGAAA CATTGTGGTT TTATTAAGAC 
    GCCCACATGG ATGAGATGCA TCACTCCTTC ACTTCAGCTC TTGATGATTT 
    GTTATTCATT ATAGCATCTT TTTTTAATTG GGGTCGGATT TCTCCATAGC 
    TGCAAAAGAG AAGTATTCGA ATAAGCAAGT TAACAAAAAG AATAGAGCAG 
    AGGCAACACA AGGCAAAAGA ACCGGGTATG GAGATATTAC TGTTGTAGTT 
    TAGAAGCT

AT1G61700.1

Model type
Protein coding
Short Description
RNA polymerases N / 8 kDa subunit
Curator Summary
Protein of unknown function that is homologous to the At1g11475 locus that encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V. Homologous to budding yeast RPB10.
Computational Description
RNA polymerases N / 8 kDa subunit; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA polymerases, N/8kDa subunit (InterPro:IPR000268), RNA polymerases, subunit N, zinc binding site (InterPro:IPR020789), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: RNA polymerases N / 8 kDa subunit (TAIR:AT1G11475.1); Has 943 Blast hits to 943 proteins in 326 species: Archae - 263; Bacteria - 0; Metazoa - 146; Fungi - 184; Plants - 71; Viruses - 3; Other Eukaryotes - 276 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61710.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G61840.1); Has 735 Blast hits to 396 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 732; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR