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54-1621-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 273286 [Map]; Strand: c
      • AT5G01730.1 - [+] show detail - SCAR family protein 4
        Distance: 0; Region: exon8 (CDS)
      • AT5G01732.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-1621-1 - 5-prime edge 
    CGGGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCA GCAGATGCCT CAGGGAGACC AAACTTTCAA 
    GTAGCTGTTC CCAAAACCAA CTTGAAGGTG GCTGCAATTC TAGAGAAAGC 
    CAACACTCTT CGCCAGGTCT CTCCCTCTCT CCTTCTTGGT TAAATTTGGA 
    CACTTGATAT AATAATCTGT TGCACAAAGA AAAAGATATA ATAATCTTGG 
    GGATCGATAA AGTGGTTTTG TGACATACAT ATAAATAGGC AATGGCNGGG 
    AAGTGACGAC GAGCACGATT CAGATAGCTG GAGCGAGTGA GTCGTTGAAT 
    CAAATCTGCA GGTAACAAAC ATATAGATCA CACTCTGTAT AGAAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26535324 [Map]; Strand: w
      • AT5G66450.2 - [+] show detail - Phosphatidic acid phosphatase (PAP2) family protein
        Distance: 0; Region: exon3 (CDS)
      • AT5G66450.1 - [+] show detail - Phosphatidic acid phosphatase (PAP2) family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-1621-1 - 3-prime edge 
    TGAAATTGAA AACGGTAGTA GGTATTTTAC CGACCGTTAC CGACCGTTNT 
    CATCTNTCAC AGCCCACAAA GCTGCACCAT CATGTCGTAG ANGCAGAACG 
    GATC

AT5G01730.1

Model type
Protein coding
Short Description
SCAR family protein 4
Curator Summary
Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.
Computational Description
SCAR family protein 4 (SCAR4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of actin nucleation; LOCATED IN: SCAR complex, chloroplast, plastoglobule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: SCAR homolog 2 (TAIR:AT2G38440.1); Has 1330 Blast hits to 874 proteins in 188 species: Archae - 2; Bacteria - 349; Metazoa - 454; Fungi - 169; Plants - 213; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01732.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01730
Link
InterPro Scan - TAIR

AT5G66450.1

Model type
Protein coding
Short Description
Phosphatidic acid phosphatase (PAP2) family protein
Computational Description
Phosphatidic acid phosphatase (PAP2) family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: Phosphatidic acid phosphatase (PAP2) family protein (TAIR:AT3G50920.1); Has 319 Blast hits to 319 proteins in 143 species: Archae - 0; Bacteria - 10; Metazoa - 89; Fungi - 89; Plants - 87; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66450.2

Model type
Protein coding
Short Description
Phosphatidic acid phosphatase (PAP2) family protein
Computational Description
Phosphatidic acid phosphatase (PAP2) family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: Phosphatidic acid phosphatase (PAP2) family protein (TAIR:AT3G50920.1); Has 319 Blast hits to 319 proteins in 143 species: Archae - 0; Bacteria - 10; Metazoa - 89; Fungi - 89; Plants - 87; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR