1. Home
  2. Mutant Lines
  3. 54-1560-1

54-1560-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25286537 [Map]; Strand: c
      • AT1G67490.1 - [+] show detail - glucosidase 1
        Distance: 0; Region: exon1 (CDS)
      • AT1G67490.2 - [+] show detail - glucosidase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1560-1 - 5-prime edge 
    ANNANAAANN ANAANAAANN NNNNNNGNAG GGNANNANNN NNANNNNNNN 
    NTCNCNGGNC TTTTGTAACC GAGANTCAAA TCCGGGTTTT CNGAGAACGG 
    AACNGCNCNG GCATTNTNCC ATCCTACTTN GATNNCGGNA GGAANTNGTN 
    TCGANCGGTG CNTNCAAAAC NAATCTCAAG ATATAGGGTN GGNTNAATCN 
    NATTAGGGAT AATAGTNAGC GTACTTTGAA ATCNATCNGC TAGTGCGNCA 
    CGGGCGTGTT GTTNGATGAN CGCCCAGTAA NCCTAGGGTC TATCACAACC 
    TTTTCCTGCT CCAGAAAGTC ATGGATCTTG TCAANGGTAC ACTAATATGA 
    TATTCACTAC TCGNANNTTT TNAATCATCA AAGNCATGAN TANGGAAAGA 
    TTCGGTTTTA GGANATGTGN ACCACNNNCA AGGCGANCNC AAAGAGAGCN 
    TATNCNGGGG AACATATCGA CNNNATGTTN ATGTNTGGGG CNTNGANCNN 
    NGGNATGCAA ANAGCACGNG TGAANGAATC NNTACNTCNG GGATATANAN 
    GGTGNNCNNA NAAANGANNG TNGTNNNANG GNANTGCANC AANTNCATNN 
    GNACCTNGGN ANNNGGNATN NANCGTGNCN TGGGCGTCAA AGAAGAATAT 
    NCNNNGTANC GCNGCANNTT CNTGNNTANA CNNATNTANG ANANAANGNC 
    AATTANCGCN NGGANGAGGA ACANAAGGNA CGGGNTNNTT GGNGANGTNN 
    NNANNNNGGA NGNAAANNAN NNGGTTNAAA NAGNNAAANG AANTNTGAAN 
    NNNNAANNNA GACGNGANNN NNNTATGGAG CGGGAAAAGG CNAATNTATT 
    NNNANNTAAA AAANNGAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19510964 [Map]; Strand: c
      • AT2G47550.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-1560-1 - 3-prime edge 
    CTATCAGGTC CCAACTTTAT TGGTGTAAAC ATAACAATCC GCAATACGGC 
    AGGACCAACC AAAGGCCAAG CTGTGGCATT GAGGAGTGGT GGGGACTTGT 
    CTGTTTTCTA CAGTTGTAGT TTTGAAGCCT ATCAAGACAC TGTTATACAC 
    ACATTCTCTC AGACAGTTTT ATCGTGAATG TGATGTCTAT GGTACTGTTG 
    ATTTTATATT TGGTAACGCT GCAGTGGTAT TACAAAACTG TAATTTGTAT 
    CCACGTCAAC CTCGCAAAGG TCAATCGAAC GAGGTTACGG CTCAAGGTCG 
    TACTGATCCG AACCAAAACA CTGGGACGGC AATTCATGGT TGTACTATAA 
    GACCGGCAGA TGATTTGGCT ACGAGCAACT ATACAGTGAA GACTTATCTT 
    GGTCGA

AT1G67490.1

Model type
Protein coding
Short Description
glucosidase 1
Curator Summary
Encodes an alpha-glucosidase I enzyme that catalyzes the first step in N-linked glycan processing. Localized to the endoplasmic reticulum (ER).
Computational Description
glucosidase 1 (GCS1); FUNCTIONS IN: alpha-glucosidase activity; INVOLVED IN: root epidermal cell differentiation, epidermal cell differentiation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 63 (InterPro:IPR004888), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: Six-hairpin glycosidases superfamily protein (TAIR:AT1G24320.1); Has 477 Blast hits to 469 proteins in 208 species: Archae - 2; Bacteria - 128; Metazoa - 110; Fungi - 127; Plants - 43; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67490.2

Model type
Protein coding
Short Description
glucosidase 1
Curator Summary
Encodes an alpha-glucosidase I enzyme that catalyzes the first step in N-linked glycan processing. Localized to the endoplasmic reticulum (ER).
Computational Description
glucosidase 1 (GCS1); FUNCTIONS IN: alpha-glucosidase activity; INVOLVED IN: root epidermal cell differentiation, epidermal cell differentiation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 63 (InterPro:IPR004888), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: Six-hairpin glycosidases superfamily protein (TAIR:AT1G24320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47550.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02330.1); Has 2676 Blast hits to 2617 proteins in 319 species: Archae - 6; Bacteria - 600; Metazoa - 1; Fungi - 202; Plants - 1841; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR