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54-1391-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16124267 [Map]; Strand: w
      • AT2G38510.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1391-1 - 5-prime edge 
    TCTGTGGCCA AGCCTTCGGA GCCAAACGTT GGACCGTACT TAGCCACACG 
    TTTCAGAAAA TGTTCTGTCT CTTAATTGTC GTCTCTGTTC CAATCGCCGT 
    TACGTGGCTC AACATCGAAC CCATTTTCCT ACGGTTGGGT CAGGACCCAG 
    ATATTACCAA GGTAGCCAAA ACCTATATGC TCTTCTTCGT CCCTGAGCTC 
    TTGGCTCAGG CCATGCTCCA TCCGCTTCGA ACGTTCCTTA GAACGCAAGG 
    CTTAACATCA CCGCTCACGA TATCTGCCAT TGTATCCATT CTTCTTCATC 
    CTCTCTTCAA CTACGTCTTT GTCGTGCGTA TGCGTTTAGG CGTTAAGGGT 
    GTGGCCATCG CAATGGCTTT CAACACTATG AATATCGACG TGGGACTGCT 
    CGTTTATACG TGCTTCTCGG ATTCTCTAAT CAAACCGTGG GAAGGGCTCG 
    CTTTGCGGTC ACTTTTCCGC GGCTGGTGGC CGCTGCTTTC TCTAGCCGCA 
    CCAAGCGCTA TCTCGGTGTG TTTGGAGTAT TGGTGGTATG AGATCATGCT 
    TTTTCTTTGT GGGCTTCTTG GGAACCCTAA AGCAAGCGTG GCCGCCATGG 
    GAATATTGAT TCAGACCACC GGGATACTAT ACGTAGTCCC GTTTGCTATT 
    AGCAGCGCCA TTGCAACCCG TGTAGGTCAC GCTCTTGGAN GCGGNCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16124151 [Map]; Strand: w
      • AT2G38510.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1391-1 - 3-prime edge 
    GCCACAGATT GGGTCCATAC CAACGGAAAG GCCTNTAAGT ACAGGAGACT 
    CCAGTGATGT TTCCAAAGCC CATAGCGAGT GCACCACCAG CGAGTTCGAC 
    TTTTCCGAGA TGACTCAAGA ACCACATTGA GATTATTGAT CTTGAGAATA 
    TGAGGAGTGA TGTCATCACA ATCGGGCAAG CTATNTTTGT GAGTGACGCC 
    ATCTCCTCTC CCACCTGCAT GGGAAAAATA AAATTAAAAA ATTATGTTAT 
    TTTTGTTAGG TTTTTCAATT GAACAACTCT TTATTTTTTC ACATGTTCTA 
    TAGGCTTCTA GTTCTAGCAA AACGCACTCN ACCNNGNCCA NNANAACAAC 
    NACCCATTCN NTCANATGNN CAATAGGNTN NTANANNTAN CNAA

AT2G38510.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G58340.1); Has 11945 Blast hits to 11897 proteins in 2040 species: Archae - 292; Bacteria - 8615; Metazoa - 143; Fungi - 328; Plants - 1321; Viruses - 0; Other Eukaryotes - 1246 (source: NCBI BLink).
Link
InterPro Scan - TAIR