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54-1295-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22244381 [Map]; Strand: c
      • AT3G60180.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -320; Region: promoter
      • AT3G60180.2 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -320; Region: promoter
      • AT3G60190.1 - [+] show detail - DYNAMIN-like 1E
        Distance: 0; Region: exon15 (CDS)
    Flanking Genome Sequence: 54-1295-1 - 3-prime edge 
    TNTAAAACCA TCAGGAGGAN ACACNCTTTT AGGTTTTATC ATCTGGACCC 
    AAGCAACAGC ATCAATCTNN TCTCTTGCNT TCNNGTATAA CTCTAGCCTC 
    TTCGNGCACT CTAGTCTCCG GTCCATCAAT GCCGGATCTT CATCTAGTAA 
    CTGTCCCAAC TGTTTCCCCT GTGAAATTTT CCGACCAACT ATAAGATTTG 
    ATGCGCATAC CACATAATAT GAAATATTTG AGACATTCTA TTTTAGCTTC 
    AGTTTACCTC TCTGCTACTC CA

AT3G60180.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, uridylate kinase activity, nucleotide kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor; INVOLVED IN: pyrimidine ribonucleotide metabolic process, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G26667.3); Has 14052 Blast hits to 13886 proteins in 4941 species: Archae - 98; Bacteria - 9111; Metazoa - 1210; Fungi - 485; Plants - 464; Viruses - 0; Other Eukaryotes - 2684 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60180.2

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, uridylate kinase activity, nucleotide kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G26667.3); Has 14052 Blast hits to 13886 proteins in 4941 species: Archae - 98; Bacteria - 9111; Metazoa - 1210; Fungi - 485; Plants - 464; Viruses - 0; Other Eukaryotes - 2684 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60190.1

Model type
Protein coding
Short Description
DYNAMIN-like 1E
Curator Summary
At3g60190 encodes Arabidopsis dynamin-related protein 1E, DRP1E, also known as EDR3, ADL4 and ADL1E, which is 624 amino acid residues long, has a predicted mass of 69.8 kDa and a pI of 7.5. Dynamin-related protein 1E belongs to a plant-specific subclass of dynamin-related proteins (DRP1), consisting of five members in Arabidopsis (A, B, C, D, E). This class is characterized by having an N-terminal GTPase domain, a central
Computational Description
DYNAMIN-like 1E (DL1E); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion, vesicle-mediated transport, defense response to fungus; LOCATED IN: mitochondrion, plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1D (TAIR:AT2G44590.3); Has 2915 Blast hits to 2753 proteins in 324 species: Archae - 2; Bacteria - 53; Metazoa - 1058; Fungi - 869; Plants - 577; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink).
Link
InterPro Scan - TAIR