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54-1276-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 214182 [Map]; Strand: c
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -485; Region: promoter
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -485; Region: promoter
    Flanking Genome Sequence: 54-1276-1 - 5-prime edge 
    GCGGTTCATC GTGTAGGCTA CATGGGGATA AGCCAATCTC CAACCATGTG 
    ATAATTGGTC TAATTTAATA AACGGTTGAC ACATAGAATT AAAATAAAAT 
    TCCCAATGGA GGTGTTACTA TAGACCGACC AAAGATTACT TCTTAAAAAT 
    ATAAAGGTCA AGGGATGATA TATACATTGA ACATTCACCC ACATCTCATC 
    TTCAATCAAA GATATTTTCA TATAATTGAA TACATATATG GGGTTCAACA 
    AATTATAATT CTAAATNNAC ATTAGATGTC TAAATTCGTA AAAGTGAAAA 
    GAAAATATAT AAATTGATCA TTGGNCNAAT GTGCAATCNT CAATANCTAA 
    ACATATGTNT AATTTCCCAT TGGAGCTAAT AATTTATTTG NGGGTGGGGA 
    GGGATNCAAT ACTCNGGGGG NGGGGGGGNG NCCNGAAAAC TATANGGNAT 
    ANNTNGNGCC NACAANAAAA TGNTTTTNTT TAGCNCCCAA ANAANCTTTT 
    TTGTGGTANA ACCCCCCTTT NNNAAANNNG GGANAAAAAG NGNTTTNTGG 
    TNNAANCCAA ANAAAAAAAA ANNCNTTGNN NNNCNGGANG AAACCCCCAN 
    NNANNNGNGG GGGGGNGNNN NAAAAAANTT TTNTTTTNTA GNGGGGGNGG 
    GATTTNTTTT NTTTTTGGGG GGGGGGGGGG GAAAAAAAAA TNTTTTTNNG 
    GNNGNACGGN GNGAAAANAT N

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 214257 [Map]; Strand: c
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -560; Region: promoter
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -560; Region: promoter
    Flanking Genome Sequence: 54-1276-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    ACTCATAATA GGTTAATATT TATATTAGTG TAATGTATTA TGGTTTCAAT 
    TTGAGTTGTA TAGTTATAAT TTAGTTTAGC ACATGATAAT TTAATGTAAT 
    GGAGAAGACA AGTATATATT TGCATGGTTC GTGCGTTAGA CAGACGTGCN 
    GTCCCATTTT CTCGTTGTAC ACGCATTTTA CGCATTTACT TAATCTATGG 
    GTCATTATTT TAGTGTACTA TGGACTATGA TATTATACAA TATTAATAAG 
    TTTCAACATA TACACCTTTA TTTACTTGTT GAGATATGTT CCATATACTT 
    ATATTTTAAA AATAAACTTA ATATAAGTAT GTCTAACATA TTCAACAAAT 
    TTTAGTTAAT AGAAAGTGAA CTAAGGAGTA TAGACAATGC ATACATATAA 
    CTAGGTAGCA AAAAATTAGT AATTATATGG GTTGAAAAAT TAAATGAAAG 
    TAAGAAAAAT GTTACATCAA AAGATATAAA TGCATACCAT TCATTACATT 
    AAAAGATTGA AGGGGAAAAA GATTAAAGCC ATCAACAGTT TCGTATTCTT 
    GCCCNTCACG ATACCGNGAA ANGGNTGATC GANAACCCTA NCTNNAATAA 
    AAANNANGGC NTTNTTATAN TNNAACCNCC CGGGCCGNNN ACCNCNCNGG 
    NC

AT4G00460.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 292 Blast hits to 291 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00460.2

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR