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54-1123-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 537247 [Map]; Strand: c
      • AT5G02450.1 - [+] show detail - Ribosomal protein L36e family protein
        Distance: 2591; Region: intergenic
      • AT5G02460.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: 2002; Region: intergenic
    Flanking Genome Sequence: 54-1123-1 - 3-prime edge 
    TAGGGTNGTC GCCTAATGGT CNGTAACGGT CAGGANCCTC TTGCNCTCTC 
    CCAANGNGCG TCNTNNATCT TGCTCATTGT CCCGACATTG ATTCGGTCGT 
    CNTTTACTAC GTTAGATTTC ATTCTCTNCT ACTCCACTAN ACNCTCNNCC 
    NNCCCNATCN TNTTCTTCCT CTCT

AT5G02450.1

Model type
Protein coding
Short Description
Ribosomal protein L36e family protein
Computational Description
Ribosomal protein L36e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: Ribosomal protein L36e family protein (TAIR:AT3G53740.4); Has 754 Blast hits to 753 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 355; Fungi - 139; Plants - 140; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02460.1

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Computational Description
Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DNA binding with one finger 2.4 (TAIR:AT2G37590.1); Has 1212 Blast hits to 1182 proteins in 84 species: Archae - 0; Bacteria - 4; Metazoa - 69; Fungi - 10; Plants - 1097; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Link
InterPro Scan - TAIR