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54-0887-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6755789 [Map]; Strand: c
      • AT5G20000.1 - [+] show detail - AAA-type ATPase family protein
        Distance: -844; Region: promoter
    Flanking Genome Sequence: 54-0887-1 - 3-prime edge 
    AAAAACACAC ACAAAGAAGA ACAAGCCTCT GAGTAAGTTC TGGAAGTAGG 
    AATCTCTTTG TTATGTAATT CAAGTCAATG GAAAACCACA TTTTCATTTC 
    GGATATGACA AATTAGAGTT TCTTTACTTT ACTGTCGGTT GCTGGTTTTG 
    AAACCCTTTT TCGGTTGATT CATCNAACAT TTTTAGATTA AGTTTTTATG 
    ACCTAAATAT TTTTTTTATA ATCTAAATGT GTCTTTAAAA CGAACACATG 
    TTCAAAGTTT TTATGTCCAA ATCAGTTATC ATATTTGATT AGAGAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6755735 [Map]; Strand: c
      • AT5G20000.1 - [+] show detail - AAA-type ATPase family protein
        Distance: -898; Region: promoter
    Flanking Genome Sequence: 54-0887-1 - 5-prime edge 
    CTTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATTTT CGTTACTTTC GCCACCGCCA TCTCAGTATT 
    CTTATGTCAC GTGTACTCTC CTCTCACGCA TATCAAATAT TTTCGTTTCT 
    GTGCACAAAG TTTAAACGTA ATAACTGGAA ACATAAGAAA GGTGCAAAAT 
    GTCCAGAGAA CAAGATATAA GCTATTGTAT TTTTCTTTTC CATTGCTTAT 
    TGTGTATTAT ATAATTCATT AATATCATAT GTTTTGTATA ATTTTGTAAC 
    TATGTTATCA TTTGTATTAA AGATC

AT5G20000.1

Model type
Protein coding
Short Description
AAA-type ATPase family protein
Computational Description
AAA-type ATPase family protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 6A (TAIR:AT5G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR