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54-0834-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17952043 [Map]; Strand: c
      • AT4G38330.1 - [+] show detail - Integral membrane protein hemolysin-III homolog
        Distance: 0; Region: intron2 (5UTR)
    Flanking Genome Sequence: 54-0834-1 - 5-prime edge 
    ATAGTTGTCA GCAGATATGG AAAAAATGGC TTAAGCAGCA GCACGAATAA 
    TCCACTTATG GATGGTCAAC TAGAACTGTG CCAAACAGAT ATGATTCAGC 
    AATGGTGCTT CTTATGTCTA TCATCAATGA GACACTAGAA AAGTGAAGAT 
    TCTTAGGGTA CCAAGGCAAA GGCTTGATTG CCTCCAATTC ACCACTCTCT 
    ATGGCCTTAA GTATGGAAAA CAAAAACCAA CATCTGAGTG CTTCTTATGT 
    CTATCATCAA TGAGACACTA GAAAAATGAA AGAGTCATGA ATCAACCTCA 
    GCCCGAAGAG ATTTCATGAA ATCATTCTCC AATTTCAATC AAATCCCATC 
    ACAAAATTGA CCACTGAAGA ATCAAAAACA GAGGCCACTT AGTCAAAAAA 
    AAACTCTGCC CACTCTTCAG CTTTCACTAT CCTTTGTTCC TTACACAATT 
    TCACAACAAG ACATTACAAT GGNGTTTATT ANAAGTAAAG TTTCAAAAAC 
    CATGGAAGCC ATTGATTCTA TAGAGGTACC TTGTAATACT CCTCGAGTCC 
    TCGTCCTCGA AATGAANATT TGAGCAGATG GGCTTTTGGA GGTTGGAATC 
    AAAGGAAGCA TCGGATTTGA NAGGGTTTTC GAACATTCTC TTGGCTATTT 
    CGAGTTGATT TCTTTTCCAA GTTGNGTCGT CTCCATTTTT GGTGGTACAG 
    TGGCCGANC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17952159 [Map]; Strand: c
      • AT4G38330.1 - [+] show detail - Integral membrane protein hemolysin-III homolog
        Distance: 0; Region: intron2 (5UTR)
    Flanking Genome Sequence: 54-0834-1 - 3-prime edge 
    ACAACTATAG AGGCTTTAGT CACATGCTTT TAGGTTTGTA GCTAGGAACC 
    ATCTGGAATC AAGTACTTGC TAGAAATAAT GTTGTTGATC CTCTGCTGCA 
    GCGAGAGAGA TGCAGCGCGT AGCAGCTTTA AACGTGTTAG GAAGGTCTGT 
    GAATAGTCTA AAATCTACAT CAAATGAGTG AAGGGAAATG GGCAGCGTAA 
    GTGTTGTTAG TACTTGTCAC TTGGCTTTAT TAGATTGTCT TGAATCATCT 
    TGGTCTCTGC TACTCCACTA

AT4G38330.1

Model type
Protein coding
Short Description
Integral membrane protein hemolysin-III homolog
Computational Description
Integral membrane protein hemolysin-III homolog; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: Haemolysin-III related integral membrane protein (TAIR:AT4G38290.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR