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54-0578-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1793252 [Map]; Strand: c
      • AT5G05965.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -618; Region: promoter
    Flanking Genome Sequence: 54-0578-1 - 3-prime edge 
    AANAGGANNG GGGGGNNGGG NGGGNNGGGN NNNNANTNNN NGNTAGTNAN 
    AGNNNNNGTT TGNAGNGGAC CAAGACCGGG NNCGNACCNC NNCCGANCGN 
    TTTNATCCCT AATACTATAC ANNNGANCAT TTAACCTATN CAAAATATAA 
    TGGTTCATCT AAGATCACAA CAGATAAAAA TAAAAAATTA TTTCAGGTAA 
    AAGATTGATT AANAGAGTCC ACCATTGNGG GGATTAATTT GTAGAAACTT 
    CTCANGGAAT CTATTTCCCA CCTTATTCTT CGTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20859355 [Map]; Strand: c
      • AT3G56220.1 - [+] show detail - transcription regulators
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-0578-1 - 5-prime edge 
    GAAGAAGGCA CTTTAAGAAA GGAAAAAGGC TCTATCATCG ATTAGTCAAA 
    ATTTCGAATT TATTAATGAT CAGCCGCCAA ACCAGAGTTT CATTCATGTA 
    TATGAAAATA AAATTAAAGC TACGTAGATA TGTAATTTGT ACGAAGTAAA 
    TTAGTTTGAT CTCTCTAATT AATGTATGTA AAGAGATATA TAAATCAAGT 
    AATGATAAAT CGGCATGCCA AAGTATATAT ATGTGAAAAA AGTTTATATA 
    TATGTGAATA CGAATGTTCA TATATCAATT GAAATCACAT ATATATAGAG 
    AGATAGTAAA TATATAAGTA GTAGCTAGAC TGATTTTGAT TTAGTATCAT

AT3G56220.1

Model type
Protein coding
Short Description
transcription regulators
Computational Description
transcription regulators; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 248 Blast hits to 248 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 248; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05965.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39855.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR