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54-0396-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6211244 [Map]; Strand: w
      • AT2G14550.1 - [+] show detail - pseudogene, putative pre-mRNA splicing factor, non-consensus splice donor TA ...
        Distance: 6498; Region: intergenic
      • AT2G14560.1 - [+] show detail - Protein of unknown function (DUF567)
        Distance: -2728; Region: intergenic
    Flanking Genome Sequence: 54-0396-2 - 5-prime edge 
    ACTTTAGCGT TGAGCCTTAA ATATTTGAAT ATGACATAGA ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6211128 [Map]; Strand: w
      • AT2G14550.1 - [+] show detail - pseudogene, putative pre-mRNA splicing factor, non-consensus splice donor TA ...
        Distance: 6382; Region: intergenic
      • AT2G14560.1 - [+] show detail - Protein of unknown function (DUF567)
        Distance: -2844; Region: intergenic
    Flanking Genome Sequence: 54-0396-2 - 3-prime edge 
    GCTAAAGTCT ACTCCCTATT ATCTTATTCT GCAAATGTAT AACAAATCAC 
    ACCATTTGTT ATTAAATCTT CTTCCTGTAC CATTTATTTG GTTTGAAACC 
    TTGACTTGCC TTACTTATTA GTAAAGGAAT TTTATTTTTT TTATATGCAA 
    AGGAATGAAT ATTTGACTAA GTGTTGTTGG AAAGAATTTT GAGCGTTAGG 
    GATCAATTTC GCGGCATGGG CTATTGAGCC GGATTGAGAG AATGGAAAAT 
    CTCGATCTTT TGCGGTTTTG GCTGTTTGGG ATCACTTTAA TGATAGTCGA 
    TAATCGTTGT TTTTGGATAA ATGAATGTGC GACTGGTAGT ATCCGATGTT 
    ACTGTTTTGG CCTACGTCAT AGACGTGGCG TCATATATAA AGCAAGTGGG 
    AGAGATATGT GCATGAAACG TAAAAATACT ATATATTCTT CATCACTCGT 
    TAATTTTTTA AAAATAATTG ATTAAATGTC ATCTTAATTC TGTAACATTT 
    ACAAAAGCGT ACCGTCTAAT TTATTTTGTA TAACTACATT AGGTTAAAAA 
    AAAAAAANTA ATTAATTTTT GGGATTTTGG CCAANNAAAA AAACCTAAAA 
    AATTTTCCAA AGTTGGAAAT TTNAAATTTT NAAANTNGAA AACCTNCCAA 
    AGGGACCNTT TGNTTCAAAA ACAAAAAGTT TTNTTNNTNG TTTTTCCCTT 
    CC

AT2G14550.1

Model type
Pseudogene
Computational Description
pseudogene, putative pre-mRNA splicing factor, non-consensus splice donor TA at exon 5; blastp match of 67% identity and 1.1e-68 P-value to GP|28374170|gb|AAH45264.1||BC045264 Similar to splicing factor 3b, subunit 4, 49kD {Xenopus laevis}
Link
InterPro Scan - TAIR

AT2G14560.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF567)
Curator Summary
Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.
Computational Description
LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA (LURP1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT1G33840.1); Has 352 Blast hits to 352 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 335; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR