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54-0332-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24214236 [Map]; Strand: c
      • AT5G60140.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-0332-1 - 5-prime edge 
    GTCATGAGGG ACTATGACTT ANCCTTCCCG GAGCGTATAA CAGTCGTGGA 
    CGAAATGGGA GCATTGGAGA AAGCAATCAA GATTCAAAAG AATGGTTGCA 
    TCTTTGTCAA GGGATTTGGT AGTTTCATCA GAAGGAACAA AATGAAGATG 
    ACTGACAAAA TGATTTNCGA NCTTAAGAGG ACTGGAGGTA ATCTGGTTCA 
    CACCATCAAG GTCAAGATTA TCAGCGGATG ATCTCTTCAC TAAGCTTTTG 
    TGAGTCTTAT GTGTCTTAGC TGTGAGTGGT TTTTATTATG TTACTAATGG 
    TAAAATGTCT ATCTTAGGAT TTGGTTTATA ACTAANGATT TGGGCGTGAG 
    AGATGTTTTC ATGTTGAATT AAGACTTTCT ATATAGAGTT CATGTCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24214352 [Map]; Strand: c
      • AT5G60140.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 54-0332-1 - 3-prime edge 
    CTTATGACAT GAGCCGGTAT GTGCTGCATC ANGAAACAAA CATCATAAAA 
    CAGATTGAGA TATTCCTTAT TAATTTATTC ACATAAGAAT CCATAACCAA 
    AGATGTTAAA TGGAGAGTGT GTAAAGATCT TAAATATTCA GGTTTTTTTT 
    TCTCTTACCA ATTGGCTCTN CTNCTTCGGA TTNANTGTCN TAGTAAAGTA 
    CGGGTTCTCG TGATCATCCA GATACCGCCT TTCGTCATCC TCATCCTCAA 
    GATCATCTTC ATCCTCAAGA CCATCATCA

AT5G60140.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR