Home
Mutant Lines
54-0293-1

54-0293-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 22506258 [Map]; Strand: w
- AT5G55550.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -2247; Region: intergenic
- AT5G55560.1 - [+] show detail - Protein kinase superfamily protein
  Distance: 44; Region: intergenic

CCTGAAACCA AGTAACTGTC TTGTTTAATC GTGTTATTTA AATATGCAGT 
GGCTACATGT CTCCGGAATA CTCGAAAGAG GGACATACTT GGTCAAGTCA 
GATGTTTACA GTTTCGGTAA GCTACGTAAG TTGATTCGAT TTTAGAGTCC 
ATCTTCTTCT GTTATAGTCA AAAGCTATTA GAGAAAAACA TTACTATATA 
ACTTTTACTA ACAACTGCAG GCTTGGAAGA AATGGAGCGT GCAGTTGATA 
ACCAAACATC TAATTAACCA AGGTTCATTG TATGCACTCA TCAAGAAACA 
ACAATACGAC CAGCTCCATT GTTGTCATTG TTTTCACCGT CTTCGTCATC 
ATCATCTAAT ATCCCATCAA AGAACGGGTC GCAGAGGAGC TCAGCTGCAG 
AAGGTCTAGC TCTCGGCTGC GCGATGCATT TTTCAATAAA TGCCTTAGCT 
TCTGGATCAT TAACTTTGTT GAGAGCCTCT GGTTTGAGGC CTTTGCTCAC 
CCTTTTGTAT ATTTTGGCGA CGCTGTCACA TTCGCTATAA GGGAATCTCG 
A

3 prime edge [+] show sequence

Chromosome: 5; Position: 22506192 [Map]; Strand: w
- AT5G55550.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -2181; Region: intergenic
- AT5G55560.1 - [+] show detail - Protein kinase superfamily protein
  Distance: 110; Region: intergenic

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
CTTTCAGGTC CCTATGTACA ATGATTAGAG TTGCCGAATA TTCGTGAAGT 
CCACGTGCAA CACCTATGTC AATTTCAAAT CTCTTGGGCC TATTTAGTTT 
ATCACTTTGG GTTTCGTCTA CAGATAGATT AATTTAGTTT ATAACTCTGG 
ATCAGATTAG TTTCCTTGTC CATATAATAT CAATTTGGTA TTGGGCTGCG 
TCTTCTTCTC TTGAAAAAAA AAAGAANGTA ANCAATCAAT ATTCANGGNC 
TNGCTANACT AATCTNAATG GTTTTTTTTT NTTTTTTTTN TTAANCTTNG 
TNCNGAAANT NNTNNCCTTT NCCCACCCTN TATTTANCAG GGAANNANCN 
CCCCCCCNAA ANCCCNCNAA ATNNCNAANT TTNNANCTTT NANTNCCCTN 
CCCNAAAAAN NNCAANTNAN NCNTAAAANG NCAANTNANT TNNCANNAAA 
CCCCCNNTTA AAANGTTTTT NGTTTCNNAC CCNTAAANCA ANCAANNCNN 
ACCANTTNNA AAATTTANTN NNCGGGGGGG GNCNNANNAA ANTTNGGNAA 
AANGGAANCC TNNAANAGCN TAANNNTNGN GGCCCTNCCA NGTGNANAAA 
GNTCCNANCC NGGCCCGTAA CCCGGGNNNC CCNNNNNNA

AT5G55550.3

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G26650.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G55560.1

Model type: Protein coding
Short Description: Protein kinase superfamily protein
Computational Description: Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: with no lysine (K) kinase 3 (TAIR:AT3G48260.1); Has 100897 Blast hits to 100061 proteins in 3189 species: Archae - 71; Bacteria - 9572; Metazoa - 37309; Fungi - 9559; Plants - 27616; Viruses - 356; Other Eukaryotes - 16414 (source: NCBI BLink).
Link: InterPro Scan - TAIR