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54-0275-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22506168 [Map]; Strand: w
      • AT5G55550.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -2157; Region: intergenic
      • AT5G55560.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 134; Region: intergenic
    Flanking Genome Sequence: 54-0275-1 - 3-prime edge 
    NTNCCGTNCC AGACCGTTTT CATCCCNTTT CAGGNCCCTA TGTACAATGA 
    TTANANTTGC CNAATATTCG TGAAGTCCAC GTGCAACNCC TATGTCAATG 
    GCAAATCTCT TGGGCCTATT TAGTTTANCA CTTTGGGNTG CNTCTACAAN 
    ATAGATNAAC TTTAGTNTAA NACTCTGGAT CACATTAGTT NCCTTGTCCA 
    TATAATATCA ATTGGGTNTT GGGCTGCGTC TTCTTCTCTT GAANAAAAAA 
    ANAANGNNNC CNCTCCNTTT NCCGGGNCNT GCTAAACNNA TTTAAANNGT 
    NNTTTTTTTN NTTTTTTNCT TNANTTTNGC CNNNNAAANT TANTNACNTN 
    NNCCNCCNNT TNNTTTTNCA GGGANTAAAC TTCNTCNCCA ATNNCCNCNN 
    TAANTTNNCG NCTNTNTNNN NGNCTNTANN GTNNCNCTCC CCCNNNANGT 
    CGCNTNTANN ANNNCTTTNT TTCGNTTTCC ATNNNTNNTN CAGTTNNCGC 
    CCCCCTNNNN NNNGANANNN TGNACNNTNT NCCCTGAANT GNNNNTNNGC 
    NNGANCCNNT ACNNGNTGNC NAAANGCCNG GGTGNGGNTN TANCNACCNT 
    CGANATTNAG GNGACACTCT NGNNANGNAT NNNCNTGTCC NNGCNCTCCN 
    NNGTNNAGNN CCCCCNCNGN NCGCGAGCNC NGGGNANTCA NCNANNCCAG 
    CGGNNNNTCA NNTAACAANG TTANNNGATT NANNANTAAN NNTNNNTCTN 
    NNATNNANTC TGANNNNATC ANNNGANNCT NNNNGCNNTN NGANNNCATN 
    NAN

AT5G55550.3

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G26650.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55560.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: with no lysine (K) kinase 3 (TAIR:AT3G48260.1); Has 100897 Blast hits to 100061 proteins in 3189 species: Archae - 71; Bacteria - 9572; Metazoa - 37309; Fungi - 9559; Plants - 27616; Viruses - 356; Other Eukaryotes - 16414 (source: NCBI BLink).
Link
InterPro Scan - TAIR