1. Home
  2. Mutant Lines
  3. 53-4524-1

53-4524-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21362316 [Map]; Strand: w
      • AT5G52660.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -156; Region: promoter
      • AT5G52660.2 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -156; Region: promoter
    Flanking Genome Sequence: 53-4524-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGAA TTATAATAAA GATTTTTCCA TTTATGTTTT 
    GTATCCGTTT ATACCAAAAA AGGGTCTTTT CTTTTTGGTT GAATTTAGGA 
    TTGTTTTGTA GTTTAGGTAA AGGTTTTCTA ATTGTCCAAA TTTTATGTTT 
    TGTGGAGCCT TTTTAGCTAA TGGGCAACTT GCCCGTTCAA AAAAAAAGAA 
    ACTAATGGGA AAATGGGTTA TTATTTANCC CATTATGAAA CATCGATATG 
    TCAAAAAAAA NCTNGGNGAT NCCNCTGTTT TTGNCTTAAN GTTNACCCCA 
    ATAAACAANA CANCAATGCT TTTTTTNTNG GCNTTCTTCN ATTAAAACNA 
    TNGATTNGNN AATGAAAATT TAAANGGANG GTTNACATNG GTTNATAAAT 
    TTCTTTAACA AANGANCATN TTTTANCCTC NCAAATAANG GAANAAATGC 
    AAAANTGNGG CNTGTTAAAA AAANANATCA ACCTTCACTA TATCTTTTAG 
    GTTTCTAATN GGTTTCAATG NGANANCATN TTTGTTGNAT TGTTGGTAAT 
    GCCACGTTCT TAATATTGTT TATACTAATG TTTNGGCGTT GGAGTCTGTT 
    ACGTAACTGA ATTAATGACA TTGGCTAAAG CNCAGNCCAA AAGTTNTAGT 
    NTANATTNGT NTAACTATAC TGAAAATTTC CTAAATTNTG GCGTTNACTA 
    ATACTGTACC NCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21044141 [Map]; Strand: c
      • AT5G51795.1 - [+] show detail - DNA/RNA-binding protein Kin17, conserved region
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4524-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCCCATCGA TGATGAAGAT TCCATTAGGG ATTGAAGAGG AACTCATAAC 
    AAACATTGTT ATGGTGAATA AGGCCCACTA ATTAAAGCCC ATACGGTACT 
    GGGCCTAAGA TTTAGATATA TATTGGGCTA TATGATTATT GTTGGGCCAT 
    TCTCTAGTAT TCTGCATTCG TACCATAATT TACTTTTTAA GTTTTGACTT 
    CTTTTTATTT TCTTTGGGAG CGTTTTCCTC TTTTAAATGA CCGAATTTTT 
    AGGGATCATG AAACTAGCGA GGACTATAAT ATATTAGAGT GTGGGCTTCC 
    AACCTAAAAC CAATTGGCAA TAGGTGGAGA GACTCATATC TTATATATAC 
    CACTTAAGAT CCTACTCAAC TTCCGATGTG GGACATTTTC CCTAATACGC 
    CCCCTCGAGA TGATGGCTCT TCTAGCCATT GATCTCGATA TGTTTGGGCA 
    TGGATCGGCG GGCCAAATAT TGGGCCGGAC CGATGTGGAT CGGGTTGAGT 
    ATGTGCGGAT CGGGCTCTGA TACCATATGA ACGTGGGTTG TATTGTGTAT 
    TGATAGGAAT GATTTACAAT ATATATAGAG GCTTAACCAT ANGGGTTTTA 
    GCTCATGAAT AATTACATTT ATAACCTTAA CTATACTTCT CCTTTACATA 
    ATATTAACTC TCTCATCTAA CTGAAGCAAG GAATGANAAA TTAANCTTTC 
    AAGCC

AT5G51795.1

Model type
Protein coding
Short Description
DNA/RNA-binding protein Kin17, conserved region
Computational Description
DNA/RNA-binding protein Kin17, conserved region; CONTAINS InterPro DOMAIN/s: DNA/RNA-binding protein Kin17, conserved region (InterPro:IPR019447); BEST Arabidopsis thaliana protein match is: DNA/RNA-binding protein Kin17, conserved region (TAIR:AT1G55460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G52660.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1); Has 1357 Blast hits to 1347 proteins in 119 species: Archae - 0; Bacteria - 4; Metazoa - 93; Fungi - 5; Plants - 1057; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G52660.2

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1); Has 1360 Blast hits to 1350 proteins in 120 species: Archae - 0; Bacteria - 4; Metazoa - 93; Fungi - 8; Plants - 1059; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).
Link
InterPro Scan - TAIR