1. Home
  2. Mutant Lines
  3. 53-4488-1

53-4488-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3951376 [Map]; Strand: c
      • AT1G11720.1 - [+] show detail - starch synthase 3
        Distance: -177; Region: promoter
      • AT1G11720.2 - [+] show detail - starch synthase 3
        Distance: -177; Region: promoter
    Flanking Genome Sequence: 53-4488-1 - 5-prime edge 
    CTCACCACAC CACACTTCTC AATCACCGAA GTCTGAAACT CATCTCATTC 
    ATTATTTTAT TCCAATTTAT TCAGAGAATA CATGTGTTGA TTAATATTAT 
    TATATTTATC ATAACAGTGG CTTTTATTCA TGAAATTAAA CCAATGGTGC 
    TCTGATTTGT TGACATCTAG CAAAATAACA ACACCAGATT TTACAATCGC 
    AGTCTCTCAC ACGCAGCCAT TTGTTTGTAT AATGTGGAAA ATAATATTCG 
    TCTGCTTCTC AGATTATATT CCTTACGGTG TCTACCAACA TTACATAATC 
    TGGACGGCTA ATCTTAAACA AATCACGTGG AAAGTATCGT AATAGCTCCT 
    GACAACCAAA TTGTTTGGCC GGTGCATTAG CGCCACGTGT CAGACAATCC 
    CCGCTTTACA GGTCCACGTC AAGCGATCCT GTTTCCAACA CTGACCGTTG 
    ATTACAAAGA ATCGTCCAAG GGTCCACGTG TACGAACAGG ATACGAATCT 
    GATCCGTACC GTACCTCCAA AACAAACCCT CTGGACAGTT CAGTAGTTTC 
    TTCCTAAAAC TGAAACAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3951492 [Map]; Strand: c
      • AT1G11720.1 - [+] show detail - starch synthase 3
        Distance: -61; Region: promoter
      • AT1G11720.2 - [+] show detail - starch synthase 3
        Distance: -61; Region: promoter
    Flanking Genome Sequence: 53-4488-1 - 3-prime edge 
    GTGGTGAGGC AGTGGAGTCA GGGGGCTGCT TCAACAACAA ACATTCTCTC 
    TCTCTTGTCT AAGCAAAGCA ACCCATATAA GATATATACC TGAAGTACAC 
    GACCACTTTC TTTCTCCATC TCGTCTCTCT TTCTGTCTTC TTCTTTCTTC 
    GGCAGCTATG GAAGTGTGTT GGCAGATACA GAGACCAGCG AGTCTCAGAC 
    CGGGTTTTCA GGAAAAGGGT CGGGTCAAGA TCAATACTTT TTCTGTTGGG 
    TTTTTTCCTC GCTCCATTTC TAGTGTAAAT CTCTTTTGTT TCTTCTCGTC 
    TCAATTTTTT TCGCTGATAT GTTTGTATAT CTCTTTAGAT TCTACTTATC 
    GGGAATTTAA GTGTAAAGTG TTCTACTTTT TCATAGTGAG ATCGCCTTTT 
    CGATTAGTAT ATCTTTAATT GAATCAATGT ACTATTTTTA AATAAGATTC 
    AACTCTGGTA GGGTCTCTGG ATTGGGGATT CTCATGTTAG AACCTCGTTT 
    GAAATTGGTA GAGTATAGGA ATTGACTTAA TTTCTCTAGG AAATGTTCAA 
    TTTCTTCTGG TCAAAATCGT CACCTCATTG AGAATACCAA CTCGAGGGGA 
    GAGAAATGAT TTTGGGGACT ATGAGCTAGA AGTAAGAGTC AGCTGAAGAT 
    TCACAGTAGA ATGAAAATGT CTCATCTTTT ATAGTTTGAT TTTAATATCC 
    ACCTTGTTTT ACTTA

AT1G11720.1

Model type
Protein coding
Short Description
starch synthase 3
Curator Summary
Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).
Computational Description
starch synthase 3 (SS3); FUNCTIONS IN: starch synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: starch biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296), Carbohydrate binding domain, family 25 (InterPro:IPR005085); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1); Has 8453 Blast hits to 8330 proteins in 2963 species: Archae - 164; Bacteria - 3762; Metazoa - 19; Fungi - 103; Plants - 3720; Viruses - 1; Other Eukaryotes - 684 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11720.2

Model type
Protein coding
Short Description
starch synthase 3
Curator Summary
Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).
Computational Description
starch synthase 3 (SS3); CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296), Carbohydrate binding domain, family 25 (InterPro:IPR005085); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1).
Link
InterPro Scan - TAIR