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53-4380-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28901345 [Map]; Strand: c
      • AT1G76930.2 - [+] show detail - extensin 4
        Distance: -4462; Region: intergenic
      • AT1G76940.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 1083; Region: intergenic
    Flanking Genome Sequence: 53-4380-1 - 5-prime edge 
    AAGCTGGAAA GTTAAATATA TAGAAATTAA ACAACTTAAG TTTCTTCGGA 
    TTCTGATCAT ACTTTATATT TGTGTCTGTT AATACTTATT TAAACCTGTT 
    CACTACAATG TATGGCCTAT TTGGATGTCG CTTATCAAAA TATAACCGTA 
    CTTGAATGTG TTTTAGTTTC CTTTTCAACC TTTTCCAAAA ACGATTTTAA 
    ACCAAATAAC GTTTTTTATC CACCTTCATG ATTTTTTAAA AATATTGGCA 
    ATTTTTTGTT GTTGAGAAAA GGTTAATTAA TGAGATTGAG GGAATGTCTN 
    TTTAGATNAT ANTTGCTATA TATATGNATA CTTTTCATAG TCGGTGATTA 
    NTCAATCATT CTTCNTGTGT NTGGAATTTC CCATGACGAA AGANNANCTT 
    NNGGGGATGA CTGNNTTATC TATTGGNCAT TAAAGAAGAA AAANAGATGC 
    TTGCNTTTTA ATGAAGAAAA AANNCTTGTT TTGTGAAAAA AAAAGAANGT 
    TTTCTNAGTA AAAAANAANG NNCNTTTTTT TNTNNNNNAN NGAAAAAGGT 
    NNTTTTNNNN NNNCCNNNAN NNNANTTNGN GGGGCCNCNN ANNAANAAAA 
    ANNNNNGGGG GGGGGGNGNN A

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28901467 [Map]; Strand: c
      • AT1G76930.2 - [+] show detail - extensin 4
        Distance: -4584; Region: intergenic
      • AT1G76940.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 961; Region: intergenic
    Flanking Genome Sequence: 53-4380-1 - 3-prime edge 
    TTCGGTATCA TATCAAGTGT GAATTAGAAC TCTATGATTG AGGAGACGAC 
    TCAACGAACT AGTGGCTAAA ACAATACTTT AAAATACTGT CAACGATATT 
    TTAGATATAT AGAAAGTAGG CGTATTTTGT TTATTAACCT CAGCAGTAAA 
    TGTGGATAAA CATCGTGAAG GCTATGGACC TATGGCCTTT AACTCCTTAT 
    GAGCACGTTG TAGCATTTCG TAGGAAACAC GTAAACAAAA ACAAACTATG 
    TCTCTAAAAT CACAAACTAT TGCTCCTAAA GTCTAAAAGG AAAAAAATAT 
    ATATATATTA AGAAGTTAAA AACCATGAAA AGGGACAGAC AACAAACATG 
    GAAGATGTTT GATATGTAAT ACGAACGTGA AACGAAGAAA AGCATCTGCC 
    TTCGGATATT TGTGTGCTGT TGTTACTCTT CTGCAAAGAG ATTAGTACCT 
    TTTTCGAATA ACTTTAACTT ACATATATTG AAAACTCAAA TTCTTATTAT 
    TATTGGCTAA AATTAGGACT GGGTAAATAG TAAATCATGC ACACTGCCAT 
    CAAAATCCTA CCGGTTGATA TGAGGTTTTA AGTCGAAATT AGGAGATTAA 
    TCCACAGCCC CGAAAGCAAT CACGTCTCTT TTCTTGTCCA TGTGTACTAC 
    ATAAAGTTTA CACAGTCAGA CATTAAATGT AACAAGATAC CATTACATAA 
    TTCGGACCAC AAAGAAATN

AT1G76930.2

Model type
Protein coding
Short Description
extensin 4
Curator Summary
Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness.
Computational Description
extensin 4 (EXT4); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: response to jasmonic acid stimulus, response to wounding, response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: extensin 3 (TAIR:AT1G21310.1); Has 71096 Blast hits to 25418 proteins in 1362 species: Archae - 168; Bacteria - 9825; Metazoa - 27207; Fungi - 9246; Plants - 12864; Viruses - 2206; Other Eukaryotes - 9580 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76940.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleotide binding;nucleic acid binding (TAIR:AT1G21320.2); Has 631 Blast hits to 628 proteins in 151 species: Archae - 0; Bacteria - 4; Metazoa - 278; Fungi - 177; Plants - 131; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR