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53-4239-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24216493 [Map]; Strand: w
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 53-4239-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGAC ATGAGACTTT CTTCACATTT CTTACCATAT 
    TATATTTTAT TTGCCGATGT TGGTTCACTG TAAAGAAAGG GTTCATGTGA 
    TTATCCAGAT ATTGTCTGTC ATGCTCTCCA GAAGAACCTA TCAAAATTTA 
    TACGCAAGAA AATAAAAAGA CAGTGATGCT CTCAGTCTCA GTTAACTTCA 
    CAAGACAAAA GTTTCTATTA TACCTTTCTT TTTTTTCTCT GTTTTGACTC 
    CTCTCCATCT TTCTTTCTCA ACATCAGCAT GATCATCGTC ACCATAATCT 
    TGATCATCAT CATCATCATC ATCATCATCA TCATCATCAT CATCAATAAC 
    TATGATATCT TCACTAGATG TATCTTCCTC AACATAATCT TGAACATCAT 
    TAATATCATC ATTATCAGCA TCATCAAGAG CTGTAATATC TTCACTAGAT 
    GTATCTTCCT CATTATAATC TTGAACATCA CTAATATCAT CATCATCAAN 
    AACTATGAAA TTTTCACTAG ATTNAACTTC TTCCCCATAA TCTTGATCAT 
    CATTAANACC ATCATCATTG TCATCAAGAA CCGTGATTTG CACTGAACTT 
    CTAAGCCTTT TACACGTTGC ACGACCATAG ATACAGAANT TGAAACACCA 
    AGAGCCATCA AACTCAAATT CTAAGAACTC TCCACCTTTC AAATCTTCGT 
    CCTTGACTAT CGTCTNCCNC CATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7177061 [Map]; Strand: w
      • AT5G21105.1 - [+] show detail - Plant L-ascorbate oxidase
        Distance: 0; Region: exon5 (CDS)
      • AT5G21105.3 - [+] show detail - Plant L-ascorbate oxidase
        Distance: 0; Region: exon5 (CDS)
      • AT5G21105.2 - [+] show detail - Plant L-ascorbate oxidase
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-4239-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAGCGC 
    GGATCCCCGG GTACTCGACN ANGCNNAGNN NNNNAACANC TNGTCNGTCT 
    CNATAATAGC ATTGTTGCAC ATNTNNTNAG GGNTTNANNT GAGTNTTCNA 
    AATANNANAT AGGATGATGT CATANNGGAA TCANTNATNN AAACTATNAA 
    TTGGTNGTNT CTTATCACAC GANATATAAT ATAGGAATCA ACNTGANGNA 
    NCTATANAGA CATTAATANA TCANCCATTN GGGCGTATNC GCACGNTTGC 
    ATCTATGNGT GTTGAGAANA ATCAACCGTT TTCTGTATTT CTTCGGCGGC 
    GATGGTGATC CCATCGCTGA NAAGATC

AT5G21105.1

Model type
Protein coding
Short Description
Plant L-ascorbate oxidase
Computational Description
Plant L-ascorbate oxidase; FUNCTIONS IN: oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117), L-ascorbate oxidase, plants (InterPro:IPR017760); BEST Arabidopsis thaliana protein match is: Plant L-ascorbate oxidase (TAIR:AT5G21100.1); Has 10302 Blast hits to 9343 proteins in 1616 species: Archae - 73; Bacteria - 4566; Metazoa - 590; Fungi - 3309; Plants - 1352; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G21105.2

Model type
Protein coding
Short Description
Plant L-ascorbate oxidase
Computational Description
Plant L-ascorbate oxidase; FUNCTIONS IN: oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, copper-binding site (InterPro:IPR002355), L-ascorbate oxidase, plants (InterPro:IPR017760), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Plant L-ascorbate oxidase (TAIR:AT5G21100.1); Has 4653 Blast hits to 4513 proteins in 833 species: Archae - 6; Bacteria - 1324; Metazoa - 438; Fungi - 1506; Plants - 1255; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G21105.3

Model type
Protein coding
Short Description
Plant L-ascorbate oxidase
Computational Description
Plant L-ascorbate oxidase; FUNCTIONS IN: oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), L-ascorbate oxidase, plants (InterPro:IPR017760), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Plant L-ascorbate oxidase (TAIR:AT5G21100.1).
Link
InterPro Scan - TAIR

AT5G60142.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR