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53-4209-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24363364 [Map]; Strand: c
      • AT5G60600.1 - [+] show detail - 4-hydroxy-3-methylbut-2-enyl diphosphate synthase
        Distance: 0; Region: exon20 (3UTR)
      • AT5G60600.2 - [+] show detail - 4-hydroxy-3-methylbut-2-enyl diphosphate synthase
        Distance: 0; Region: exon20 (3UTR)
      • AT5G60600.3 - [+] show detail - 4-hydroxy-3-methylbut-2-enyl diphosphate synthase
        Distance: 0; Region: exon19 (3UTR)
      • AT5G60610.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: -227; Region: promoter
    Flanking Genome Sequence: 53-4209-1 - 5-prime edge
    GGGATAAACN ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCCTAC ACAACAAACA GATGATATAC ACACACAAAT
    ATATATATCT TCTCTCACAG TTTTCAGAGA ATGGCCCACC CATCTTTCTC
    CGTTTTGAAA TCTACTCANC AGCCNGGGNC GGGNAGNNCN CGCGGNCCNT
    GNTCTTTGAT CAGACCGATC AGAGCATCTG TTGCCTCCGT CATAGCTATC
    CCACGCTTCA CCACCGTCTG TCCACAACAT ATCAAAATCA GATTCTTTTG
    TCACCCGGAA GCTCCGAGTT GTATATAAAC ACATTCACAA CGAAGCTCAA
    GAATAAAGGT GTTACCTTTC CGACATAAAG GTCGATTTTT CCGGGAGAAC
    CACCTACATA TCCGAAATCA GCATCTGCCA TTTCTCCTGG TCCATTCACA
    ATGCATCCCA TGATTGCGAT CTGCGCCATT ATTCAATTTG TTTACATTCA
    AAAACAGAAG AAAACTTTTT CTTGAAAAAC ATGTATGAAA GTCTTGAGTT
    TTAACCGAAA CGCCAGGTAA ATGGGAAGTC TTTTCTCGGA TCTCGGCGCT
    GATTTCTTGC AAGTCGAAAA GCGTTCTTCC ACAAGACGGG CACGATACAT
    ATTCCTGCGA TGATTTTGCA AGTTATTGCT TCTCTCTTTT TAGAAAGAAA
    ATGCAGAAAT ACTGATTCTT TGNGCTTTTA CCGNCTTAGT GNTACGCATT
    CTGATCCT

AT5G60600.1

Model type
Protein coding
Short Description
4-hydroxy-3-methylbut-2-enyl diphosphate synthase
Curator Summary
Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP+ reductase.
Computational Description
4-hydroxy-3-methylbut-2-enyl diphosphate synthase (HDS); FUNCTIONS IN: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 4 iron, 4 sulfur cluster binding; INVOLVED IN: response to light stimulus, isoprenoid biosynthetic process, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, response to bacterium, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydropteroate synthase-like (InterPro:IPR011005), 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical (InterPro:IPR017178), 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type (InterPro:IPR004588); Has 12699 Blast hits to 7350 proteins in 2074 species: Archae - 0; Bacteria - 8133; Metazoa - 2; Fungi - 2; Plants - 72; Viruses - 0; Other Eukaryotes - 4490 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60600.2

Model type
Protein coding
Short Description
4-hydroxy-3-methylbut-2-enyl diphosphate synthase
Curator Summary
Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP+ reductase.
Computational Description
4-hydroxy-3-methylbut-2-enyl diphosphate synthase (HDS); FUNCTIONS IN: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 4 iron, 4 sulfur cluster binding; INVOLVED IN: response to light stimulus, isoprenoid biosynthetic process, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, response to bacterium, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydropteroate synthase-like (InterPro:IPR011005), 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical (InterPro:IPR017178), 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type (InterPro:IPR004588); Has 12643 Blast hits to 7322 proteins in 2058 species: Archae - 0; Bacteria - 8079; Metazoa - 2; Fungi - 2; Plants - 72; Viruses - 0; Other Eukaryotes - 4488 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60600.3

Model type
Protein coding
Short Description
4-hydroxy-3-methylbut-2-enyl diphosphate synthase
Curator Summary
Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP+ reductase.
Computational Description
4-hydroxy-3-methylbut-2-enyl diphosphate synthase (HDS); FUNCTIONS IN: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 4 iron, 4 sulfur cluster binding; INVOLVED IN: response to light stimulus, isoprenoid biosynthetic process, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, response to bacterium, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydropteroate synthase-like (InterPro:IPR011005), 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical (InterPro:IPR017178), 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type (InterPro:IPR004588); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60610.1

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT2G26860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR