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53-4081-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9556288 [Map]; Strand: c
      • AT4G16970.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -504; Region: promoter
      • AT4G16980.1 - [+] show detail - arabinogalactan-protein family
        Distance: -690; Region: promoter
    Flanking Genome Sequence: 53-4081-1 - 5-prime edge 
    CTCACGAGCA CTCTTTGGCG ATCATTTACT ATTTATCCAT CTCTACATTA 
    TACCATCACA AATGCACATG TTCCATATAT GATATAACCA TCCATACATA 
    GTCATGCATG CATGCATATA TATGTTTTAT GGGATTACNT TTCATTTGAA 
    ATCGACGACT AATGTTGTTT TCTGTAACCA TGAACTCCCA GTTTTTCTCT 
    TTGCATGTTA TAAATTGAAC TTCTAGTTCT AGAGCATCAA AAACATTAGT 
    TAACCAATAA TAGTATTTGA GAAGTTCATT CAAATATATA GTTCGAAATG 
    CAGCAAGTTT TAGCATCTTG AATTGCATTG TTCTAAAAAT TATCTACAAG 
    ACTACAATCA ATGAAACATT TCCAGGTTAT ATGGGCTCAT GTAAAATGGG 
    CCTGTAGACG CATAAGGCCG TAATAATCCA GCTAGCAAAG AAATGAGCGG 
    GAACATTTTA TGTACAAAAT CCTCGAAACA AAACATCACA CGTACCCGCA 
    CGTGCCATTC TCCCGCTCCT TCTTCATTTG CCCCCCAAAT CTCAAATTCT 
    CAAATCCCTA GCTTCTCTCT CTCCCTCAGA TTCACAGCAT TTGCAATGTC 
    AGAAAACTCG GAACCGCGTC AACTCGAGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9556362 [Map]; Strand: c
      • AT4G16970.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -578; Region: promoter
      • AT4G16980.1 - [+] show detail - arabinogalactan-protein family
        Distance: -616; Region: promoter
    Flanking Genome Sequence: 53-4081-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    AGACAAAGGA AATGGTATGG GGTAACCAAA ATGTCGGTTA GTGGGTGCGG 
    ACATAATATT GGCCGTGGAG CTAAATCAGT CTGTGTGACT AAATACAACA 
    CAAATGGTCC CTTTTGTTTT TCGTTTTTTG TTTTGTAACA TAGCATTATG 
    CTCTTTTATC TTGTCCTATG TAAATTTTGT CTTCTCCTGA TAATATTATA 
    GAATATCTTG ATATGGTTAT CATAAATTTT CTGTTACATT TACAGAAAAC 
    AAAATGAACA TTAATGTTCT AACATATGAA TGGCTAACAT CAGTAATGAC 
    CTGTTCTAAT AAATTTGATA TGGCCCCTTA AAAACCATCC CGTGAATCCG 
    ATTGATCGTT TCCACTATGT CTTTAACAGA ATAAATATTT ATATAAAAGG 
    CATTGTAGTC ATAATAACAT AATATCCTCC ATTTCCATAT ATATTGACTA 
    TTCTATCTGT ACCTACAATG AGATTTCAAC TTTGGAGTTT TCATCTTTTT 
    TTCTTTCCAA TTTGTGGAGG AAAATAAATC AGCATCTCAT ACCTATCCAT 
    CGACTGATAC GTGTCACACA ATGTATCCAA CGATCCAAAA TTATAAAACA 
    AATAATCTCT AATATATATC CAAATAGCAC AAAGAACCTT CACTTTTCTC 
    TCCCATTCTA CCTTTAACTA CTCTCACATA TATCTCTGTC TATATATCAC 
    TTTACATAAA CCACCATTCC ACACA

AT4G16970.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G19110.1); Has 37123 Blast hits to 30477 proteins in 1124 species: Archae - 42; Bacteria - 1923; Metazoa - 14429; Fungi - 5359; Plants - 8078; Viruses - 40; Other Eukaryotes - 7252 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16980.1

Model type
Protein coding
Short Description
arabinogalactan-protein family
Computational Description
arabinogalactan-protein family; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 61554 Blast hits to 29210 proteins in 1485 species: Archae - 170; Bacteria - 11775; Metazoa - 21955; Fungi - 6238; Plants - 10828; Viruses - 2421; Other Eukaryotes - 8167 (source: NCBI BLink).
Link
InterPro Scan - TAIR