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53-3970-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5338749 [Map]; Strand: c
      • AT1G15520.1 - [+] show detail - pleiotropic drug resistance 12
        Distance: -423; Region: promoter
    Flanking Genome Sequence: 53-3970-1 - 5-prime edge 
    GTTGGACCCA GTGTTTTTGT TTTGTAAAGA TCTTTTTGTG GCCAAATTAA 
    AGTTTTGTGG TTGCATTTAA AATGGCAAAG ACAACAACGA AAAACTGTCC 
    AATATGATTG TTGCATGAAA AAACATGATT ACTNGTATAT TCAAAACCTT 
    TAATCATGAA TGAGTTCACA CTGTCTAGAG AAATAGTTTA GACTTTAGTG 
    TGGGATCAAT TAATTACTTT TAATTAACGT CTGAAGCAGT AGGACTCCTT 
    CTAGATTTCC CAGACAGAGG AGTCACAGCT GACGTAATAG TTCTTTTTTG 
    TTAGCTGATG TAATAGTTTC TCTTTTTTTC CTTTATTCGT AAATTCAAAA 
    GCACATAACG TTTATTTCTT GGTCACGTTC CGTCTCTGAT TTTTCCACTT 
    TGGTGAAGAA GAAACATACA TGCATGTGCC TAATTATTAT GAATAGTGAA 
    ATCTCCTCAA TGCATATATA TACGGAGCAC ACAAACCCAA CATTCATATC 
    ATCTTTCATC TACAATTTCT CTCTTGAGTT TCTTTTCATG TGTTAAAGTC 
    TTATTGTCTT GTTAAATTCT TTAAATCTTT CATCTGACAC AAACAAAAAA 
    AGAGAGAAGA AAAAAAAGAA GAAGACTTTG ATTTCTTGGA TACAAAATGG 
    AGGGAACTAG TTTTCACCAA GCGAGTAATA GTATGAGAAG AACTCATCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5338821 [Map]; Strand: c
      • AT1G15520.1 - [+] show detail - pleiotropic drug resistance 12
        Distance: -495; Region: promoter
    Flanking Genome Sequence: 53-3970-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCGG 
    ACCACCATTT TACGTTTCCG GATTAATTAT ATATATGTTC CAATGATCAA 
    AATAGTGAGA AACTGATTAA CTTATTGTAA AATCAAGTGT TCAACCAAAA 
    CAAAAGTTGG AATGTACAAA TAGTAACGTG AGGAGAAGAA AACAAACGAA 
    TGTAAGTATT ACTTCTAGAC GTTGACGACT CTCGTTACGT GGTCTCAGCA 
    GCCCCTTCTT GTTCGTAGTC CGCCATTATT TAATTGAATT GTATCAGCCT 
    TGGACTTTTT ATCTTCAAAA TAATATTCAT ATTCTTCTGA TTTCTTAAAA 
    CTAAACCTGC ATTTTAAGAG AGAATATATG TGTGTGGTTT GAATTGGTTA 
    TGTGTAAATT AACGTCTAGA GAAATTTACA CTGAATTTAT AAATTGACTT 
    CTCAATGTAT AAATTAAGTA TACTAGGTCA TGAATAAAGA GAGATAAAAA 
    AATTTAAATG GTAAACGTGT GTAAAAAAAA CAGATACAGT ACAGTTGACC 
    GATTTATATA TTCTTTTATG GTTATTTCTT TTATTAGTCT GAGTCGAAGA 
    TTCTAATTGG ACCATGAATT GAAAGTTGGT CTTCGTTACC TTCCCTCCAA 
    AAAAAACTAA CGAAACAACC ACTTTCTTGG AAGTTGCCAT TTTTTAATAT 
    TCCAATTCTA TCGAGAACGT CCCAAACCGG AATGTAGCTT AGGATGATGA 
    AACCAGTTAT TGGTAGGC

AT1G15520.1

Model type
Protein coding
Short Description
pleiotropic drug resistance 12
Curator Summary
ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers, stomata and roots.
Computational Description
pleiotropic drug resistance 12 (PDR12); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 11 (TAIR:AT1G66950.1); Has 377983 Blast hits to 279992 proteins in 3946 species: Archae - 7615; Bacteria - 304057; Metazoa - 8776; Fungi - 6428; Plants - 5794; Viruses - 2; Other Eukaryotes - 45311 (source: NCBI BLink).
Link
InterPro Scan - TAIR