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53-3959-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12377947 [Map]; Strand: c
      • AT4G23750.1 - [+] show detail - cytokinin response factor 2
        Distance: 0; Region: exon1 (3UTR)
      • AT4G23750.2 - [+] show detail - cytokinin response factor 2
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 53-3959-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATATTA ATTATCACCA TTAACTTACA TTAATTCAAT 
    TTCATTCATA TTTTTATATA TAACAAAGAA AAAAAGATTA CGAACATAAC 
    CGAGATTTTA TGTCACCGGT ATACAAAACT TTCTCCGGTT CCGTTTAGTA 
    ACGGCCGGTA TAACTATTTA TTTATTTAAA ATATTATTAA ACAGCTAAAA 
    GAGGATCCGA CCCGAATAGA TCCCCGATAT CTTGAAAATG GTCCTCCATG 
    TGCCAGCTGG ATAATCCGGA TCCGAAATCG AATCCGAAGT TCATATCCGT 
    ACACATATCC GCCGTGAATA GATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12385837 [Map]; Strand: c
      • AT4G23770.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1341; Region: intergenic
      • AT4G23780.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 516; Region: intergenic
    Flanking Genome Sequence: 53-3959-1 - 3-prime edge 
    AGTGCACTTG GATCAAAAAA GGTACAAAGT CAAAAAACAT CATTTTGAGG 
    CCAAAAAAAA ATGAGGACCT TGTNCTTCCC TGTCCTAAGC TATAATCATC 
    TCTATCTTCC AAGAGGAATA AACTTATCAT CAGATTCAAT GAATATCATA 
    AACTAGCTAG TTATTTCAAC TTTTGTTTAG TTGTTACTAT ATANAACAAT 
    CTGAAAGTAN ATTAATGATG CAAGCTGCTT CTCTTACAAC TTTGNGTTGG 
    GCTAAATCAC TTATTACACA GTTACACTAC AAACTTTCAT ATCTTATCAA 
    CCCTCCTAGT CCATCANANA GACTCATAGT CATCTACTTC TACTAACTTC 
    CAAAGATTTT GAAACTTCCA GTTTCACCAC CACATCTGAC ATTGNGCTTC 
    TCCATCTCCA CATCTTGATC ACAATATGAA GGAGTACTCT AAATTCTTAT 
    GTGATGAGTT ACAGTTTCCT ACATTGCTTT CACTTTGGGT TCTTTCATCG 
    TCGTCACTAA TCTCTATCAC ATCTGCAAAT ANAAACATGT TTAGTTTATG 
    TAATGCTAAC ACATTTAGTT AGACACATAT CAAAAAACAC TTAAAATTAC 
    CCTCTTGTGA TTCAAACTTG TTCACATTAC GTTTGTCTGC AACTCTTGCA 
    CCACTTGGTC CTGAATT

AT4G23750.1

Model type
Protein coding
Short Description
cytokinin response factor 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Monopteros target gene.
Computational Description
cytokinin response factor 2 (CRF2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 1 (TAIR:AT4G11140.1); Has 5899 Blast hits to 5717 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 5881; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G23750.2

Model type
Protein coding
Short Description
cytokinin response factor 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Monopteros target gene.
Computational Description
cytokinin response factor 2 (CRF2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 1 (TAIR:AT4G11140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G23770.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23780.1); Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G23780.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23770.1); Has 51 Blast hits to 49 proteins in 22 species: Archae - 0; Bacteria - 9; Metazoa - 12; Fungi - 0; Plants - 14; Viruses - 2; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR