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53-3690-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23890265 [Map]; Strand: w
      • AT5G59200.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3690-1 - 5-prime edge 
    CTTTGAAAAA CTAACAAAAT CGGTTACACG GNTAAGTTCG AAAACAACGA 
    AAGCATCTTG GTCATGGAAG GTCCTAATGA TCTTGGCGTG AATCGATGGA 
    ACATGGGCAA TGTTCTTGCA GCTTCGTAAT ACAGAGATTA ATGTTTTCCT 
    GCGTGAAAGC CTGAGAGTGT TTGAATCGGG ATCACGCCGG AAAGTTGAAG 
    GCCCTCCGGT GATCGCTGCC AAGGAAGAAA TCATTTCGCG CTCAATTGAA 
    GATTCTAAAC CGTTACAATT TTCGGTTATA ATTAGCCCAA TCCAAGTAAA 
    ATGGGCCTGT AACAAAAGGC CCAGTTCGTT GATGAAGATA AAAAAAAAAN 
    CCANGGAANC CANCCCGGNC CGTNAACCNC CCNNGCCNTN NAAAANNNAA 
    NNNNNGNNNG NA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23125897 [Map]; Strand: w
      • AT5G57120.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -1384; Region: intergenic
      • AT5G57123.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 1025; Region: intergenic
    Flanking Genome Sequence: 53-3690-1 - 3-prime edge 
    AAATATATAA TATATCATTC TACTGTTCTA GTTATATTTT TGATATGAAT 
    CTTGTTAATA GTTTCAGTAA GCTGTTATTC TATTACCACT GTTACGTTTT 
    TTGGACTGAA ACATGTGAAA ATCTGAAAAC AGAAGCCTCA CCTGCCACAG 
    CCGTATTTGT GAACCGGTTT GCTCTTTGTA GCAACATAGT TTCATGGTTC 
    CCGTCCGATT TCGACTAGTA TNATCTACCC ACG

AT5G57120.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57123.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59200.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Encodes a chloroplast RNA editing factor.
Computational Description
ORGANELLE TRANSCRIPT PROCESSING 80 (OTP80); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G37380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR