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53-3662-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19833771 [Map]; Strand: c
      • AT5G48910.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3662-1 - 3-prime edge 
    ATATCTCCTT CCTTCTTCTA CCAACCCGCC ATGGCTACAA GCAGTCAAAA 
    GATTAATGTA GGCAACATCA CTAGGTCGAA CTCCAGCCTG CCTCATTTTA 
    CAAAAACAGT CAATAGCNTC ACCTGCCTGG CCATGTATAG CAAACCCGTT 
    AATCATCGCA CTCCAAGTAA TCACGTTCTC TCTAGGTAAC CTCTCAAATA 
    CATGAATCGC TTTCTCAATG ATCCCACATT TCGAATACAT ATCAATCAAA 
    GCAGAGCCAA GCACATCATC AATCCTAATT CCACTATCCT CTGCATACAA 
    ATGCAACCAT TCTCCCAACT CTAAAGACCC AAGCCGTGAA ATAGCAGGAA 
    GAACACTAAC CAAAGTAACA TAATTCGGTC TAATATCCCC TTTCTTCATC 
    TAC

AT5G48910.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Curator Summary
Encodes LPA66, a chloroplast protein of the pentatricopeptide repeat family. In lpa66 mutants, editing of psbF that converts serine to phenylalanine is specifically impaired. lpa66 mutants also display a high chlorophyll fluorescence phenotype.
Computational Description
LOW PSII ACCUMULATION 66 (LPA66); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR