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53-3629-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24873703 [Map]; Strand: w
      • AT5G61950.1 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase-related protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3629-1 - 5-prime edge 
    GCTAAAGGAA ATCACATCAA GGCCTTGGAG ATACTTGAAG ATTTGATTTC 
    AATCCATTGG AATGCCAATG ACGCATGGCT TCTTCATATC GAACAAGGTA 
    ATGTTTTCGT AGACCTAGCT GAAAAAGCAG AGGACCGTGA CATGGAAGTC 
    GCATACTTGT TGGGTTGTGT TGCTTGCTTT TCGCAACATG TGACGGTATT 
    TGAACTTTGT GCACAATCAC TCTTCATGTT GGGCAGAAAC CTTGCGTCTG 
    TGTCACATTA CAAGAAATGC TTGAAGAAAG CAAGAGAGGC TTTATCTGAT 
    AGTAACTCTA AGAAACTGAG TTCTTCTACT CCAGTGGCTT TCCGAGCCAT 
    AGTATCCCGA AAGAAGAAAG ACCTCGAGGG TTTTATCGAA GATGCAGAGT 
    CCATGATCGC TGCTTCCAAG ACTTCTCCTT TACAAAAACC TGAGCCAAAA 
    GTTCGGGACC CAGAGAAAAC TCCAGAGCCG TCTAAGGATG A

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24873587 [Map]; Strand: w
      • AT5G61950.1 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase-related protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3629-1 - 3-prime edge 
    CCTTTAGCGA TGAGATCTTC AGCGTCTTTG TAGAGTCTTT CCGCCATAAC 
    ATCCTTCTTG AAAGAAGACG CCATAGTAAC GATTCTTCAC GATGATTCTT 
    GCTCTCGAAG GTTTTGTTTT GTGGATCACG ATGATTCAGA GAGATTTGTG 
    AGAGTAGAGG CGGGAACAAT CAACGATTAT AACCGTAAGG TACTGAAGAA 
    GAAGAGGCTG GCTTTTTATA TCACGTGAGA GCCACGTGAC ACAAGCCTTA 
    AACAAACAGA GAGAGACCCA CAATTTTGAG TATTGGGGAA TTTTGTCGAA 
    CACCTTGTGT GCATTATCCG TTTGGGATTT TCTCGGAATA AAAAAATCAA 
    AAAAAGACCC AAAAATTGAG TGAATCTTCG AATATGGGTT AAGAATTGAA 
    TGTGGAATGG TCTTCATGTT GATGATGAAC AACATTC

AT5G61950.1

Model type
Protein coding
Short Description
Ubiquitin carboxyl-terminal hydrolase-related protein
Computational Description
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT5G61940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR