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53-3552-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2168458 [Map]; Strand: w
      • AT4G04404.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: 478; Region: intergenic
      • AT4G04405.1 - [+] show detail - transposable element gene
        Distance: 2733; Region: intergenic
    Flanking Genome Sequence: 53-3552-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TTACCTTCTT CCCTGCAAAG TAAGTCACAC 
    TCCAGCATAT CGATCAAAGA GCAATTAGCG CGTACAAATG AGAAAACTGA 
    AGATGGGTTA TTCACTGTTT GGCATTATTG ACTACTCAGA AGCTAGCAAA 
    ATTGTTTCAG TACCATCATG CNTTTGAAGT CTCTTATGAG GAGAAGATCT 
    TACATTGTGT TGAGTCGAAA CAAGATTTCA GTGAAGTGTT TTCTTACTCG 
    GGTTTCGATT AGTCTAGTAG TTGAACAATG AGGAGTATGT TTGGAGATTG 
    AATCTTTAGT TTGTTAAACT TTGTTCTCAT CTTTACATAA ATAGAAGAAA 
    GAAACGAGCT TTGCTTGGTT TAAATACCAT TTTGTTTGGT TAACTCAAGT 
    TTCAGATACA AAATCAATCC AAAGTGAAAT TGATTACTTA TCTTAACCGA 
    ATCTTTTGAA TCCAACCCTG AATTAATAAA TTATAAAATA ACCCAAATTC 
    CAAAAAAAAA TTATCCTGAA ATGAACGGAA TCCAAACTAT GGAAAACCAA 
    ATTAAACTAA CTAAAATTCA CTAAAAATAT TAATATTTTA TTAAATGTAT 
    ACAAATATAT ATTTAAATAT AGGGTAATAT TAGTAGATAA CCAAATAAAA 
    CATACAAATT AAGAAACTAG CAGAGAGAAA GTTTTTTGTT ACAAAATAAC 
    CATGGACCCA CGTTGTCGGA A

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2168396 [Map]; Strand: w
      • AT4G04404.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: 416; Region: intergenic
      • AT4G04405.1 - [+] show detail - transposable element gene
        Distance: 2795; Region: intergenic
    Flanking Genome Sequence: 53-3552-1 - 3-prime edge 
    ACCTGGTTTT ACTGCAATTA CTAGACTTGT CGAAACCCAA GTGAAAAAGC 
    AGTTCACTGA AGTCTTGTTT TGATTCAACA CAATGTAAGA TCTTCTCCTG 
    AGAGACTTCA AAGCTTGAGG GTTGTGAAGG TAATGAAAAA AACCTGGTTT 
    TACTNGCAAT TACTTGACTT GTTAAAAAGC CAAGTGAGAA AGCAGTTCAC 
    TGAAGTCTTG TTTTGATTCA ACACAATGTA AGATCTTCTC CTGAGAGACT 
    TCAAAGCTTG AGGGTTGTGA AACAATCTTC TTAGCTTCTA ATGAGTGAGA 
    CTGTGAATTA TTATCTTTAG TACGCACTAA TTGCCCTTTA ATCGATCTGT 
    GAAGTGTTGT ATGGCCACCT AAAGCTTGAA AAGACTCAAA ACTCTTGCCA 
    CATATTTTGC ATTCATAGCT GCAGCTACAC TCAGGTGTTT TCTGTGACTT 
    ACTATTCAGA GAAAGTAGTT CACCCATGTC TTGTTTCGAC TCAACACAAT 
    CTAAGATCTT CTTCAACTCC TGAGAGACTT CAAAGTTTGA TGGTTTTGAA 
    AGAATCTTCT TAGTTTCTGA TGAGTCAACT AGT

AT4G04404.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Computational Description
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G29340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04405.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 5.6e-50 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR