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53-3544-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22506966 [Map]; Strand: w
      • AT5G55560.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-3544-1 - 5-prime edge 
    ATCTTGACCT GATCATTTTC AATCATCAAG ACACAACTCA ACTCAATCAC 
    ACACACACAC TAGTAGAACA ATTTACGATT AAGTAAAATA CCTGGCCGAT 
    GTTGCCATTG ACGAAGATAT TGCTACAGTT GAGGTCTCTG TGGATGATGC 
    AAGGGTCGTG AGTGTGGAGA TAATCCAAGC CCTTGAGAAT CTGTTTGGAC 
    CACTTCTTCA AAGCCCTCAT AGAGACGTGT CTGTGCTTCT TCCGGTACTC 
    TCTCAGGTTT CCGGAGGTAC AGATCTCGGT GATGAAGTTC AAGGTGTTGT 
    TTCTCTCGTC TCTCCACACT TTATACAGGG TGATGATGTT ACTGTTCTTA 
    AGGTTCTTAA GCAACCTGAC CTCCGAGTAA AGCCTCTCGG TCATGGCTGG 
    ATCATCCGAA AAACATCTCA GTTTGACTTG GTTCCAAGCC ACCTCGATGC 
    CTTCATCTAC TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22506889 [Map]; Strand: w
      • AT5G55560.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-3544-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTACTNTGG 
    TGATCTAGGT TTAGNTGCAC TTGTGGGGAA NAACCATTTN GCTCANTNGA 
    TNCTNGNGAC ACCNGANTTC ATGGNTCCTG AGCTGTNCGA GGAGAACTAC 
    NCTGANATGG TNGACATATA CTCGTNTGGA ATGTGCGTTT TGGAGCTTGT 
    GTCACTCNAG ATTCCTTATA GGNAATGTGA CAGCGTCGCC AAAATATACA 
    AAAGGGTGAG CAAAGGCCTC AAACCAGAGG CTCTCAACAA AGTTAATGAT 
    CCAGAAGCTA AGGCATTTAT TGAAAAATGC ATCGCGCAGC CGAGAGCTAG 
    ACCTTCTGCA GCTGAGCTCC TCTGCGACCC GTTCTTTGAT GGGATATTAG 
    ATGATGATGA CGAAGACGGT GAAAACAATG ACAACAATGG AGCTGGTCGT 
    ATTGTTGTTT CTTGATGAGT GCATACAATG AACCTTGGTT AATTAGATGT 
    TTGGTTATCA ACTGCACGCT CCATTTCTTC CAAGCCTGCA GTTGTTAGTA 
    AAAGTTATAT AGTAATGTTT TTCTCTAATA GCTTTTGACT ATAACAGAAG 
    AAGATGGACT CTAAAATCGA ATCAACTTAC GTAGCTTACC GAAACTGTAA 
    ACATCTGACT TGACCAAGTA TGTCCCTCTT TCGAGTATTC CGGAGACATG 
    TAGCCACTGC ATATTTAAAT AACACGATTA AACAAGACGT TACTTGGTTT 
    CAGGTCCCT

AT5G55560.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: with no lysine (K) kinase 3 (TAIR:AT3G48260.1); Has 100897 Blast hits to 100061 proteins in 3189 species: Archae - 71; Bacteria - 9572; Metazoa - 37309; Fungi - 9559; Plants - 27616; Viruses - 356; Other Eukaryotes - 16414 (source: NCBI BLink).
Link
InterPro Scan - TAIR