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53-3542-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17593378 [Map]; Strand: w
      • AT4G37409.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -467; Region: promoter
      • AT4G37420.1 - [+] show detail - Domain of unknown function (DUF23)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3542-1 - 5-prime edge 
    CCCCCAACAC GATTTATCGA GCTGCCTTCT TTGCCACGAC ACGCCCAGCT 
    AAATCAAGAT TCGTTAGTTA CGTGATCAAC ACTCAAGATT CAAATCATCA 
    TCAATTATCC AACGGTTCAC GTAGGATCAG AGCCGAAGCT GTTCTCTGGC 
    CAGGATGGGA GATTCTTGTG ATCGTTTCAC CGGAGGAGAA AGCTAAGCCA 
    CCGCCGTTTC CAGGAGAGAA TTACACATGT TTTTACCCTA ACGGAGAGAA 
    ATCCACGGCG AGATTCGCCG CGATTCTCCC TTTCTCAAAC CGTGCATCAT 
    TCAGATGCAG TCTTCCCGGA ATTTATCGCC ACCACCATCC AATTCCGACT 
    CCGATCCTCG CCTCTTCGAA AAGGTTCCAA CTTTCGCCGG AAACACGTTG 
    GCCTGATCTC CCTCTATGGA ATTTCGTCGT TTTCGAAGCC ATTTCAACAG 
    AAACCGACGT CGTTCTCTTA GTCAAGGGGC CGAACCGTGG ATTANAGTTC 
    CAATAAACCA CCGGAGTCGT TTCGGTGTGT GTTTGGCGAG GAGTCCGATA 
    CAGCCATTAG AACCGCCGTG ACTAGCTCGG GCCAAGAGGT GTTCCGATGT 
    TCATTACCGG ACATAACGAT NGATACTCCG GTCAAAATCT ACCTCGACCA 
    GGACGATGAA TGGGCGANTG AAAATCTNTT CGGGTTNCGA GGANTGGGNC 
    GACCANGGGT TTGAAATCGN CCAACCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17593255 [Map]; Strand: w
      • AT4G37409.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -344; Region: promoter
      • AT4G37420.1 - [+] show detail - Domain of unknown function (DUF23)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3542-1 - 3-prime edge 
    GAATAATAAA GAGAGATGAA ACCAAAGAGA GAAAGAGAAA CGAGGATGAA 
    GAAGAGTGTG GTTGTGTGTG CTCTGTAACT TGTCTTGTGA TGGAAGAATT 
    GACAAGCATC GTCTCCTGCT CCGGCGATGG ATTTTGGTGT TAATCGAGGA 
    GAAGAAGAAG AACAAGTCTT GAAGGATAAC GTCATTTTCG ATTACNTATC 
    CAACNATCTT CTTTTGTAGC

AT4G37409.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37420.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF23)
Computational Description
Domain of unknown function (DUF23); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G40720.1); Has 241 Blast hits to 241 proteins in 76 species: Archae - 0; Bacteria - 129; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR