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53-3538-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23222704 [Map]; Strand: w
      • AT3G62780.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3538-1 - 5-prime edge 
    GCATGAACCT CGCCGATGTC TTTATCTACT CCTCCACGTT GCTCGCACTT 
    GATCTTGAAA GTGATCACAA GGCGGTTAGC CTCTGCTAAG TTTTGGTCGA 
    GGATGAACTT CATGACATCA TTGCTCCATT TGGGGCTGGT TCCACCGTCT 
    CTTGCCGCTT GTGTCCGCTG CTCACGGTGG TCAGAGCATT TTGGATCACC 
    GGATAACTTC ACGGCCACAA AAACATCCAT CTTCGACACT TTCTTAAGCC 
    CTTTTGCTGA TGTCACATTT ATTTCTAGAG ATCTCGTCCC CATTTTGATA 
    TTACCCAATG AAAAAGCTGG TTCTCTCTAG ACACATTACA TATAGGAGTT 
    GCAGAGAAGA CTAAGTGAAA GTCAATGACA ACTATTTATA GAGGACCTTT 
    TCATTATTCC ACCCACTGTT CTGTTTTTCA T

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23222583 [Map]; Strand: w
      • AT3G62780.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3538-1 - 3-prime edge 
    TGTTCAGGTG AAAGAACTTN TGGATCATNT TGGAAACGAT AAGACCGGTC 
    AAAGATACGG TCACATATCA AATCGGGAAA TCCAAAGCCG ATATTAGTTT 
    CACTTATTCG TTCACAGGTC CGGTGGAGGN CCCGACCGGT GGNCGGNGTG 
    CTCACGGNAC CCAGCTCAAG CGCCGGTGCG TCCTGTATCG ACCTACCGGC 
    CCGTTTTGAA CGGACCCATG TTGAGTCAGT TGAACGGACC CGTGTTGAGC 
    CAGTTGAACG GTCCCGTGTT GAGTCAGTTG AATGGTTCCC GTCCGATTTC 
    GACTAGNATN ATCTACCCAC

AT3G62780.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G16510.1); Has 675 Blast hits to 575 proteins in 98 species: Archae - 0; Bacteria - 10; Metazoa - 206; Fungi - 19; Plants - 326; Viruses - 29; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR