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53-3488-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 8884395 [Map]; Strand: c
      • AT4G15560.1 - [+] show detail - Deoxyxylulose-5-phosphate synthase
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-3488-1 - 3-prime edge
    TCTGAAACCC AACAACAATT CCCATGTAAG TNCACTTNTC TCTTCTCTGC 
    TTCATCATGG AACTTGATTT AAGAACTATG AGATTTTGTA GCTTGCCCAT
    TTGCTGAAAT CTTGAATTAA ATAATGGGTT TACGTTTGTT TTTGACAAAA
    GTCAAACAAA TTTGACTCCT TTTCTTAGTT ACTTTATTGG AAATCTGAGG
    AAAATATAGT GAAATTAGAC CAATAATATT GCTTCTTTGG TTCTGATTTG
    NGGGAACTGA TTANAGAAAA TGACAGCTTT TGCGATTTGG GTCNTGTGTT
    GTGGCNCNTT CNANCAGAAN AGCNNNTGTG NGNGCNCCAC TTGCAAAGAA
    NGGTGANNAT GGGGCACACN CACCGGGGGC TCGATTACTA GACACTATTA
    ACTNCNCACT CCACNTGAAA NATCAANGNN GNNCNCGGTA AANATTCNAG
    CTNAAATGCA TTTGTTTTAA CTTTNTTACA AACCCGCNCN TCGGNGGGGT
    NNGNTTCCAN CTCANGGNNG GAANAGAAAC ANCTTTNTTN TTNCCCNCNN
    TCCGACNTAA AAAANAAAGG GNCNGTTTCC CNTGGGCNTN CNNGGGCNGG
    GGNNGCNGNC NNCNNCCCTN ANNGGNAAAA AAAANCTTTT TNTTTNCNNN
    NAAAAAAAAA AAAGGGNGGG GGGGGGGGGG NNNTNNANTN TTTNNNAANG
    GGGGGGNGNN NNCAANTTTG NGNCNNCNAN CCAGGAG

AT4G15560.1

Model type
Protein coding
Short Description
Deoxyxylulose-5-phosphate synthase
Curator Summary
Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis
Computational Description
CLOROPLASTOS ALTERADOS 1 (CLA1); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: chlorophyll biosynthetic process, response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475), Transketolase binding site (InterPro:IPR020826), Transketolase-like, C-terminal (InterPro:IPR015941), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: 1-deoxy-D-xylulose 5-phosphate synthase 1 (TAIR:AT3G21500.2); Has 24450 Blast hits to 24392 proteins in 2940 species: Archae - 267; Bacteria - 15281; Metazoa - 526; Fungi - 278; Plants - 446; Viruses - 0; Other Eukaryotes - 7652 (source: NCBI BLink).
Link
InterPro Scan - TAIR