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53-3444-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17545249 [Map]; Strand: c
      • AT5G43680.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: intron6 (CDS)
      • AT5G43680.2 - [+] show detail - unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 grow...
        Distance: 0; Region: intron6 (CDS)
      • AT5G43690.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -924; Region: promoter
    Flanking Genome Sequence: 53-3444-1 - 5-prime edge 
    CCTGCAACAC TCACAAGAAT AAAGAAAAGA GTTTAATCAA TACGAGTTTT 
    GAGTTTTTTG CTTTGATCTT AACTGTACAA CAGATAGACT AAAGAGGTTG 
    TTTTGTCTCA CCTTTCAAAG CTGGAGTTTC TTTCTCGGCT TGTGCGAAAA 
    AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17545313 [Map]; Strand: c
      • AT5G43680.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: intron6 (CDS)
      • AT5G43680.2 - [+] show detail - unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 grow...
        Distance: 0; Region: intron6 (CDS)
      • AT5G43690.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -860; Region: promoter
    Flanking Genome Sequence: 53-3444-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGTTTGCAGG GAAGTTTTTC AGTGACAGGA AAGGAGAAAA TTGAACTCAA 
    AAGTTTTGGG GACCATCATC GATCACAAGA CACCGGCAAG GTACAAAAGA 
    GTAGGCCTTG TTATTTAACT GTTTTTTTTT TTNTNTNCAA TNACCCAAAA 
    NTNTGNGGGN CCTTTNTTTT TNNTNCGGCA NCAAGNNACC TAANNTNGGA 
    CCNAAGNCAG TNNNCTNTTT NNTNTTGAAA TNAANGCTNC CNNTTTNTAG 
    GTTAAGGTTT NGTNGTTNNC TTCGNNGGTT NANNGNNAGT NGNNTTTNCN 
    TAAANTNGGT NGGGTTTTTT TAAAAANTAA AAATNTTTTA AATTTTNTAA 
    AATTTTGGGT TTTTTNNCAA GNGTAGTTNT AANCNTCCNN GGTTTTNTNA 
    AAGTTTNCNT TTTTAAAAAA AAATTANGGT TNTAATNAAN TNGTTTNAAA 
    ACTTTTTANG GGTNTTTTTN GNTTCNTANC CCCTAAAAAA AANTNGGGTT 
    AAAGGNAANN TN

AT5G43680.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G43680.2

Model type
Protein coding
Computational Description
unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages.
Link
InterPro Scan - TAIR

AT5G43690.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: sulfotransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Sulfotransferase domain (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G45070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR