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53-3410-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14279240 [Map]; Strand: w
      • AT4G28950.1 - [+] show detail - RHO-related protein from plants 9
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 53-3410-1 - 5-prime edge 
    TCCGGGATGA CAAGGGATAC CTCGCGGATC ACACCAATGT CATTACCTCT 
    ACTCAGGTAT ATATGGGTAA CCTCGCTATT TGTTCTGTTT TGAAAATGAA 
    TCTTTAAGAC TTGAAAACTT TTCTCAAGCT TATGACGTTT GTGGATACAG 
    GGAGAGGAAT TGAGGAAGCA AATTGGTGCA GCTGCTTATA TTGAGTGTAG 
    TTCCAAGACT CAACAAGTAA GTTCTCTGAT TCAAGAAGTA ATGTTTTGAT 
    AAAAGTTTTA GAATCTTATG ATGACTTTGC TTTGGATTTG TTGTAGAATG 
    TGAAAGCAGT GTTTGATACA GCGATCAAGG TGGTTCTTCA GCCTCCAAGG 
    AGGAAAGAGG TCCCGAGGAG GAGGAAGAAT CATAGAAGAT CCGGTTGCTC 
    CATTGCGTAA GCGTTTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14279119 [Map]; Strand: w
      • AT4G28950.1 - [+] show detail - RHO-related protein from plants 9
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 53-3410-1 - 3-prime edge 
    GGAGATCTAA ACAACACCAA GACGTAATGG ATTAGCCAAG AGAAATTTCA 
    AAACAGAAAA TCTGCAAAAC AAAACTTACC TAGCTTTGTA CCAACAAGAA 
    CTATGGGAAC ATTTGGCGCA AACCGACGAA GTTCAGGCAT CCACTGTCAA 
    AAACAACAAT CATATCAGAA CTCATATACA CATTTCAACA TCCACCACAT 
    TCACTATCCA AATCTGTTCC AGTACAAGAT TCAAAACATT TTTACCTTCT 
    TGAGTACATT TTCGTAACTC GCCTTGCTAA TAAGCGAAAA GGCTAAGACG 
    AAGATATCAG CTCCTCTATA ACTCAATGGT CTTAACCTAC TGTAATCTTC 
    ATCTCACTT

AT4G28950.1

Model type
Protein coding
Short Description
RHO-related protein from plants 9
Curator Summary
A member of ROP GTPase gene family.
Computational Description
RHO-related protein from plants 9 (ROP9); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RHO-related protein from plants 10 (TAIR:AT3G48040.1); Has 24641 Blast hits to 24616 proteins in 674 species: Archae - 9; Bacteria - 56; Metazoa - 12738; Fungi - 3855; Plants - 2680; Viruses - 20; Other Eukaryotes - 5283 (source: NCBI BLink).
Link
InterPro Scan - TAIR