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53-3307-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22529451 [Map]; Strand: c
      • AT5G55620.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -751; Region: promoter
    Flanking Genome Sequence: 53-3307-1 - 5-prime edge 
    ATTTTGATAG GTATGANTCT CACCAACGCT TCCATATACT TTTTTCAGTT 
    TTGTTCATNT AACTCGACG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22513544 [Map]; Strand: c
      • AT5G55565.1 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-3307-1 - 3-prime edge 
    ATCAAAATGA ACAAAAGGAT CACCAACCGA ATAGTAAAAC CAACTACTGT 
    ATTTTTTCTT CTTCTTTCTT AATTTCTCTC TTTATTAAAA ATTTGTTAAT 
    TATATCATAA TCTTAACTGT TGTATATAAA GTATTTCTTC CTAAAATATA 
    CAAGGTGTTC CGCAACAAAT GCCAATAAAA ATGGTTTCAA ATTAAAAAGA 
    AAGACCAAAA CTCATATGAA CCTCAAAAAC ATAGTATGCT ATTTTTAGTT 
    AAAATAAACT TTCTCATTTC AAGTTCTATT TTTTTTGTCA TTCGCTTAGT 
    TATTAATGCT CAAAAAGCCA TTTCTGAGGA ATGTTGTTTA CATAAGTGAC 
    ATGAAGCATC ACACGATCTA AAAGCTGTTA GAACCACATA CGAAGGCAAA 
    CACAATCACT ATGTACTAAC CGCAAGGTAT AACATGTCAG ACTAGTTGTA 
    CCGCTGACAC AATCAGCCTC AACTTAGGTG TTGAAATCGC ATCGGACACC 
    CTTGACCATA CATCAAACGA GCATCCACAT CCACATCTGC ATCCGCATCC 
    GCATCCACAT CGTGTTCGTT CTGAACTTAA ACCAGTGGAA CGCTGGATTC 
    AAGTTTATTC ATGGACCACC CATGGGAACC TGTTATCTAA GTAGCACTAA 
    TGCCGGTATA ATCATCAATA TAACGGTTCG AGAGAAACGA TCGAGGCTCA 
    AACAGATGAC ATCTCT

AT5G55565.1

Model type
Protein coding
Curator Summary
Encodes a defensin-like (DEFL) family protein.
Computational Description
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55620.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR