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Mutant Lines
53-3260-1

53-3260-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 2499136 [Map]; Strand: w
- AT5G07810.1 - [+] show detail - SNF2 domain-containing protein / helicase domain-containing protein / HNH end...
  Distance: -652; Region: promoter
- AT5G07820.1 - [+] show detail - Plant calmodulin-binding protein-related
  Distance: 0; Region: exon2 (CDS)

CACTTTTCTG TGTCTCAGAA CAACTTTCTC TCGTTTACCT TCACCGTTAA 
TCTTCCCAAC ACCTTCTCTT TTATCTTTCA GGCTCTTCTT CTTTTTGTTC 
ACATCACTTG TTCTGAGTTT TGGTTCTTGA ACAACTATCT TCTTGAATTT 
GATCGATGTT GTAGTGGAAT CTTCTGGTTT TGGTTCAAGA ACTTTCCCTT 
TCTTGAAATT CATTTGCTGC TTTGTTGGAG GAGGAGGTGG AGTAACCTTT 
AAACCAATCC TTTTCGGTCT AATCTTGCTT TCGGGTTTCG GATTAGTAAC 
AAGATTAGCA GAACCACTCT GTTTCTTCTC AGGCAAACTA GTCTTGGACC 
TGGAAGTAGT CTGTCTTATT GGCCTAGGAT CTGACCCTGT AACCACCTCT 
GAGGGTGGAG GCAAAGATGG TAATAAGCTA AGACTTTTCT TGCCGGTGCT 
TCTTATGATT TTCTTCTCAG AAGATTGCTG AGTCTCACTG ATCTTAACAC 
TTTTGGTGCT CATCTTCTTC TTCTTCTTCT CAACACTAGA TTCAACAACA 
TACAATGTCT TCTCCACCGC ATCATCAGGT CTAACCGGTT CATCAATGTT 
CGTCTTCTCT TTGTTCTTCA GATTCTTTAA ACGTTCCTCT TTAGAATT

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 2468901 [Map]; Strand: w
  - AT5G07760.1 - [+] show detail - formin homology 2 domain-containing protein / FH2 domain-containing protein
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: 53-3260-1 - 3-prime edge
```
TTACCAGTGG ATCTTTTTCA GGTTTTGCTG CCCCAAGAGA GAAAAAGGTC 
TCTATTTCTG ATACATCAAG TTCTATTGCA CTAGCCAAAA AAAAAAGGGN 
NAAAAAAAAT GG
```

AT5G07760.1

Model type: Protein coding
Short Description: formin homology 2 domain-containing protein / FH2 domain-containing protein
Computational Description: formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 protein (TAIR:AT5G07650.1); Has 48311 Blast hits to 23266 proteins in 1185 species: Archae - 68; Bacteria - 7011; Metazoa - 18492; Fungi - 4245; Plants - 10792; Viruses - 1661; Other Eukaryotes - 6042 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G07810.1

Model type: Protein coding
Short Description: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
Computational Description: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), HNH endonuclease (InterPro:IPR002711), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor18 (TAIR:AT1G48310.1); Has 16904 Blast hits to 14939 proteins in 1977 species: Archae - 110; Bacteria - 5677; Metazoa - 3556; Fungi - 3371; Plants - 1315; Viruses - 123; Other Eukaryotes - 2752 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G07820.1

Model type: Protein coding
Short Description: Plant calmodulin-binding protein-related
Computational Description: Plant calmodulin-binding protein-related; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT5G61260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR