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53-3001-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25881599 [Map]; Strand: w
      • AT5G64740.1 - [+] show detail - cellulose synthase 6
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3001-1 - 5-prime edge
    GTTAGCTGTG TCTGTTTTCA GACAAATATG AACACCGGTG GTCGGTTAAT 
    CGCCGGTTCT CACAACAGGA ATGAGTTTGT CCTCATTAAT GCCGATGAGA
    ATGCCCGAGT ATGTTTCTCC TCTTC
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25881483 [Map]; Strand: w
      • AT5G64740.1 - [+] show detail - cellulose synthase 6
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-3001-1 - 3-prime edge
    CTGNTAACAA TCTNGNNTTN CACAAATNGN TNGCCANAGA GAGGAATGTG 
    TNGACNTTAA CTNANCTCGN TNGTCAGNGA TCCATAGACC ATATAACACN
    NGATNTATAG CNCTCTNTCN CTCTCTNACA CNCACNACAN ANCNNCAGCN
    CGGACCCTAA AANAACANAC TTTGATGGGA AAAATATAAT AAAAATACAA
    AAGGGGGAAT AGTGAAGGTG TATTGTATAT ATGGAGATGG TANTGATTCA
    GCTGCNAGCC ACANCCTTTT CTTTTCTTTT GGTTTTGGGC CTNTCTCTCC
    TCTCTGAAAG TGCGCACNNT CNCAGAAATA AAGGATGATT CCAGAGCGAG
    AGAGAGAGAN AGAGNCNCTT TGGTAGAGAG AGAGAGAGAC ANACGCNCGN
    CCGTGATGNN CTCCCNTAAN AGGGGNTAAT TTNNTCNCGC GCNGANANAA
    ANATTANTNT GNGTGNNGTT TTNCNNGTNG CGAGANAAAN ANGGGGCGGA
    TCTCNNNTNT NNGNNTGGGN GAGGGCCNCC CCCCCNNAAN GNGNNANNAA
    AAAANNNNGG GGNTTATGAN NNGTGGGGGG CACCCCGCCC CNNNCGCNNT
    TTTNNTTTTG NGGGGGGNTG GNGGGGGGGG NGNNAAAANN NCCNTNTNNN
    NCNNNCCNCC CNCNCAAGGG GGGGGGGGGG GGGGGGNCCT NTATTTCNTA
    ANAANATAAN AANNTTNTTT NNCNCTTTAG NNNNNNCCAN GCNNAACCNC
    TNNTNTTTTG NTT

AT5G64740.1

Model type
Protein coding
Short Description
cellulose synthase 6
Curator Summary
Encodes a cellulose synthase isomer. CESA6 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA6, along with CESA1 and CESA3 are present in the same plasma membrane complex for cellulose biosynthesis. CESA2 and CESA5 are related to CESA6, having partially redundant roles. As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening.
Computational Description
cellulose synthase 6 (CESA6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: in 6 processes; LOCATED IN: cortical microtubule, transverse to long axis, Golgi apparatus, cellulose synthase complex, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: cellulose synthase 5 (TAIR:AT5G09870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR