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53-2552-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1936717 [Map]; Strand: c
      • AT1G06350.1 - [+] show detail - Fatty acid desaturase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2552-1 - 5-prime edge 
    TGTGTGATCC CACTAGAGAC GATGGCTCCA GCCGAAGCAG AGTGGTGAGT 
    ACTATGCAAA AGAGGGCAGT ATTTTCAGAG ACAATGGCCG TTGGTCGATG 
    TCGTAAGAGC AGTCAGTCGT TGTGATTGTG CACCTTTTTG TGTCTCTTGG 
    CGCCGTTTAA CTTCAAATGG GAAGCTTTAC GGTTCGGTTT GGTGCTCTTC 
    GCGTTGACTA CACTCAGCAT CACATTCTCA TTCCATAGGA ACTTGTCTCA 
    CCGTAGCTTC AAGATACCAA AATGGCTCGA ATATCCTTGG GCTTATTCTG 
    CTGTTTTCGC TCTTCAGGTT AACACCAGCG TTTTGAGAAT CTAACTAAGT 
    GTTACCACCA TGTCAAATGC TTTTCTTTCT TTTTCCCAAG TATATGATTA 
    GAGAAGAAAA AATATATTTT CAGGGTGATC CA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1936855 [Map]; Strand: c
      • AT1G06350.1 - [+] show detail - Fatty acid desaturase family protein
        Distance: -36; Region: promoter
    Flanking Genome Sequence: 53-2552-1 - 3-prime edge 
    ATTTGTTTGA GTTATAAGTT GTATGAACAT AAGAGACTGG GTATATATGG 
    GCTGATACTG TGGCATCAAA GTCCGCGTCG TTAAATGCAA TTCACCACTC 
    TCCATAAATG CTCTGTCTAC CTCTTCCATT TTTTTTAATC TTTAATATAC 
    CAGGCAATAG CACATGTTTT CACAAATTCA AACAAGTTTT TCTTGTAGCC 
    TCTGATAGTC CCAACGGCCA ACGCCATTTC TTTTGCAAAA TTTCGTAAAA 
    ATATTAACGA ATTAAATGCG AAGCTAATCC AAGAATCAAT ATTAACCTTA 
    GGTGACGACT TTACGTTCTA TCCGTCTCAT GCGATGCTTA TATAAGCTAC 
    TAGATTTTCT AAATCTCTTT AATATATAGC ATCCTGCAGG GATCCTATAA 
    TAATAGGCCA ATATATAAGT TTTTCTTTTG TTTTGTTGTT AACGTTTTTT 
    TTTCTT

AT1G06350.1

Model type
Protein coding
Short Description
Fatty acid desaturase family protein
Computational Description
Fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06360.1); Has 3426 Blast hits to 3426 proteins in 822 species: Archae - 0; Bacteria - 1532; Metazoa - 799; Fungi - 234; Plants - 106; Viruses - 4; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR