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53-2399-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6164024 [Map]; Strand: c
      • AT2G14475.1 - [+] show detail - pseudogene, similar to putative beta proteasome subunit, blastp match of 64% ...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 53-2399-1 - 5-prime edge 
    GAGGAAGACA TGGATCTAAC AGAAGATGAT TTCAGAAATG TGTTTGGCCA 
    GTTTTCAGGG CAAGCATCGA TAGTGGAGGT TGGGGATGCT GTGTATGTGA 
    GAGTCGAAAC CGTGAAAGTA GATGTTAGTT GCATCATTAT TCTTCTTTTT 
    ATTGTTGGAG GTNGCTAATG CTTGTGTTAC TTAAACACC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6170245 [Map]; Strand: c
      • AT2G14500.1 - [+] show detail - F-box family protein
        Distance: 2266; Region: intergenic
      • AT2G14510.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 888; Region: intergenic
    Flanking Genome Sequence: 53-2399-1 - 3-prime edge 
    CTTCCTCCAT GTCTATACTT ATTTACCCCT CCTCAGCTGA TAAAGTCAAG 
    AGCGAAAAAC ATAATAAATC CTGGCGACTG TCGCTACTTT TGGTCGTTGA 
    TCCAGCGACA TGCAAACAAA CAACTTTTGG TCGATGTCGC TGGTTTCAGT 
    CGCCAGCGAC ATGCAAGGGT TTACAAGGAT TTTAAAAGAT TTACAAGGGT 
    TTTTAAAAGA TTTTTACAAG GTTCTTAAAA ATATTTACAA GGATTTTTCA 
    ATGTATTTTT TTAGCTAGAA AAAAATTTGT TGCGGGAAAG AAATTTTGGC 
    GGGAAGAAAA ATTTTGATGG GAAAATTAAT TTTAGTAGGG AAATTTATTT 
    ATTTTTGGCG GGAAAAAAGT TTCCAAGAAA AAATTTTAGT TTCTAATTAC 
    ATGTTCGTAT TAGATAAGAG TAATTTGGTC ATTTTGTTAA AGAGAAAGGA 
    TATTTTTTAA AATGGACAAC AGAGAAGGAT AGTGTTGCAA AATGTTACTA 
    GAAAATGGGT AGAGTTTGCA AATCTCCCTA TTATATTTAG GTTCTCTATT 
    TCTAATTTAT AGTATATATT TCCACAATTT AAAAAAAAAT TGATTCAATT 
    TAAATTANAT TAGTGTTNGC TCTCATTTTT ATTTTCTATC TTATATTTTA 
    ATTAAGTTTA ATTGAAGTTT ATAGTGTTAT TTGNGAAATT TTANAAATAT 
    TGNGCTAATT TTAAAANAAA AAGTGTTNTT TTTGTNA

AT2G14475.1

Model type
Pseudogene
Computational Description
pseudogene, similar to putative beta proteasome subunit, blastp match of 64% identity and 2.7e-16 P-value to GP|14594921|emb|CAC43321.1||AJ291736 putative beta proteasome subunit {Nicotiana tabacum}
Link
InterPro Scan - TAIR

AT2G14500.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT5G25290.1); Has 280 Blast hits to 272 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G14510.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G14440.1); Has 142542 Blast hits to 115596 proteins in 3812 species: Archae - 89; Bacteria - 12558; Metazoa - 42060; Fungi - 9008; Plants - 61359; Viruses - 344; Other Eukaryotes - 17124 (source: NCBI BLink).
Link
InterPro Scan - TAIR