1. Home
  2. Mutant Lines
  3. 53-2286-1

53-2286-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17979983 [Map]; Strand: c
      • AT4G38400.1 - [+] show detail - expansin-like A2
        Distance: -243; Region: promoter
      • AT4G38401.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -98; Region: promoter
      • AT4G38410.1 - [+] show detail - Dehydrin family protein
        Distance: -957; Region: promoter
    Flanking Genome Sequence: 53-2286-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TCACTCTAGC TTTCACACTA CCTTTTTTCC TTTTTACTTG 
    GAATGATGAT TTATAGGCTA GACACACACT ACACATTCCT ACTACTCAAA 
    ACTCTCAACT CAATAAATAA TGAACACAGC CTACCCTTGT GCCAGCTGCT 
    TCTATATATG ACGTGACGTG TGCTGTGATG CTGAGCTGGA ACCCATTCCC 
    TTCTTCTTCT TCATTCTTTT CTGTTCACTA TTTATATATT TGATTCACTC 
    TCTCCTTCCT CTCCTCTCTA TTCATCGCAT CCCCCACACA CCTCATTAAC 
    ATTATAATTG TTTTTTTAGT TATTCTTCAA TTTCAAGAAA ATGCTGCAAG 
    GCTTTCTCTT CCTCCTCTCA GTCGTACTCC TCTTCTCCTC ATCTGCAGCC 
    GCCTGCGACC GATGTCTTCA CAGTTCTAAG GCAGCTTATT TCTCCTCTGC 
    ATCTGCTCTC TCCTGTGAGC TTTCCATCTC CTCTCATTAC TTCACTCTTT 
    CCAGTCTTTT CTTTTTTTCC TTTTCTTTTC TCATCTCTTG NATATGTTAT 
    GGGTNNNNAA ANNNANCTGG AGCTTGNGCA TATGGCTNTA TGGNTACCGG 
    NTTNTTNNNC GGACACATTG NTGNGGNTNT GCCTTCCATC TACAAAGACG 
    GGTNCNGCTG CNGNANCTTG CTTNCAGGNN NGATGCNNGA ACCCNANNCN 
    TTTGNNNNNN NNNANGAANC CNCGGNNATT GNNNNANACT NNAANAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17980043 [Map]; Strand: c
      • AT4G38400.1 - [+] show detail - expansin-like A2
        Distance: -303; Region: promoter
      • AT4G38401.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -158; Region: promoter
      • AT4G38410.1 - [+] show detail - Dehydrin family protein
        Distance: -897; Region: promoter
    Flanking Genome Sequence: 53-2286-1 - 3-prime edge 
    GCTACCACCA CATTACCCAA TAGTCTAGGG TGAATGACGT GGCATTGCAC 
    CGACTCTCTG CTCTGCCTCA CAGCTGGGCC TGGTACTACA TGTTGATGTC 
    GGTCGGTCTC TTGTTTTCTC AAGTGATTTA TTACCACACA CTCTATCTAG 
    CTAATTGTGT TCCTATTAAT CATTCATCGG ACATGTTAAA CTGTTGATTT 
    CAGTCAATGA TGAGATCTTC AATATTCAGC AGATTGGTAG CTAAGAAACA 
    TCCATGTGAG AACGACTCTG TCACATCTAC GGCATTCATT ACTACATGTG 
    ATGATATCTT CATACTTCTA CCTCTTTTGT TTAAGACCCT ATATCAACTG 
    CTGATTTCTT TCAAGTTCTA ATGATGGATA ACAGATTTAG AGAAACACCC 
    ATGTCTTGTT GGGTTTAGGC TCATGACTAG AACAGGAAGA GTAAACCTTT 
    GGTTCCAATG ACGTCCAAAG AAGTCCAATG ACGTGAGCAG CATTAACCAA 
    AACCATCAAG TTTAACCCAA TACTGGCCCT TTTATGTTTA TGTAAGCCCA 
    TCTTCTGATT CGGCCCAATC AAGACACTTC AGTTAGCAGT AAGATTTTCA 
    AACTTATTTT TCTAATAATG TCTAAACAAT TTAAACAGTG CTTTTGCTCT 
    CTTTATTGGA TAACGTGGAC CGTCCACACC GACAATCCAT TGGTCGACGA 
    AACGCAGAGT ATTCGGACAT GTACTATGT

AT4G38400.1

Model type
Protein coding
Short Description
expansin-like A2
Curator Summary
member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational Description
expansin-like A2 (EXLA2); INVOLVED IN: response to cyclopentenone, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin-like A1 (TAIR:AT3G45970.1); Has 1877 Blast hits to 1874 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1869; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38401.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38410.1

Model type
Protein coding
Short Description
Dehydrin family protein
Computational Description
Dehydrin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); Has 3050 Blast hits to 2020 proteins in 252 species: Archae - 4; Bacteria - 32; Metazoa - 564; Fungi - 141; Plants - 1342; Viruses - 0; Other Eukaryotes - 967 (source: NCBI BLink).
Link
InterPro Scan - TAIR