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52-0744-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19473325 [Map]; Strand: c
      • AT1G52290.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -876; Region: promoter
    Flanking Genome Sequence: 52-0744-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAAT CCACAAACCA AAGATCACGG TAAATAGTAG 
    TATTAGTATG TTTTTTCATA TCTTTTGTTG GTCCCTTTGA TTCTTTTTTA 
    CTTTTAAAGA CAAAAAAAAT AATGGCAGAC AAGACAATGT GAATATACTT 
    ATGTAGTCGN GCTTGTTTTT ATACAGGGGN NAGNATAAAT TTGANNAAAT 
    AATTCTACTA TATACATTAT NCGATTAATT TNNCAAANTN GATTGGAGAA 
    ANAGGGTTNN AAAAAAATTG GGANTTACNG CTCCNNAAAA ANTTTANTTG 
    TTANTTCACN CCCGAAATTT TATAACCNCC CCNGGGGGGA CACCGGCCCN 
    TANGGGGGGG GGGGGGTNNT TCNCCCCCCC CCCCCCCCCC CCCCCCNNNC 
    CNTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20297910 [Map]; Strand: w
      • AT1G54370.1 - [+] show detail - sodium hydrogen exchanger 5
        Distance: -777; Region: promoter
    Flanking Genome Sequence: 52-0744-1 - 3-prime edge 
    GTTTTCTTCT TCGTTTGGAT ATTGCACCAA ATAGTAGTCA GATACTACGT 
    TTGGATGCAA TCTTTGATAT TATTGTTACA AAGAAAAAAA GAATAAAGAA 
    AAACATGTAA TACATATGTA ATATACTTCG AAACATATGT AATTTTGCAG 
    TTCCCAAAAC AATGTTCTTT TTGTTTTTGA CATGGTAATA TGAAATTACT 
    TTTATAAACA GATGTTTCAA ATAATATTTG CGAATTTTAA TATTTTTGGT 
    TACAGAATTA GTTTGTACGA GTATGTTAGT TCTATCTTAA TTATTAATAA 
    TTTAATAGAT AATCATATTT TATCATAACA GAAATATTTT GTTTTATAAT 
    TTAGATGATA ACC

AT1G52290.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: proline extensin-like receptor kinase 1 (TAIR:AT3G24550.1); Has 117666 Blast hits to 116327 proteins in 4415 species: Archae - 105; Bacteria - 14380; Metazoa - 43397; Fungi - 9805; Plants - 32502; Viruses - 416; Other Eukaryotes - 17061 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54370.1

Model type
Protein coding
Short Description
sodium hydrogen exchanger 5
Computational Description
sodium hydrogen exchanger 5 (NHX5); FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: lithium ion transport, sodium ion transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Na+/H+ exchanger, isoform 5/6/8, conserved region (InterPro:IPR018409), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: Na+/H+ antiporter 6 (TAIR:AT1G79610.1); Has 6647 Blast hits to 6641 proteins in 1771 species: Archae - 114; Bacteria - 4554; Metazoa - 890; Fungi - 160; Plants - 421; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).
Link
InterPro Scan - TAIR