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52-0555-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2905405 [Map]; Strand: c
      • AT1G09020.1 - [+] show detail - homolog of yeast sucrose nonfermenting 4
        Distance: -590; Region: promoter
    Flanking Genome Sequence: 52-0555-1 - 5-prime edge 
    TATTACATGT CTACCGAGAA TAGATGTACA ATGTAATTTC ATGGATTATG 
    TTTAACCCGA TAATAAATTG GTGTGGGATG TAATGATTTA TTTTCTTTAA 
    TTTAAGAAAT TATAAGAGTT GACACAATAA AAATTAGAGA AAAAAAAANC 
    ANGGCCTTTT CTTTTNNCTT NATTNATTNN CCCNGCTTCA AACCCCANGA 
    NANTAANANA AANGNGTNTT TTNNAANCGT TTTTNAANGT NAGTTGGGTT 
    TNGTTNGATT NATAGNCCTG TTNANCATCA AAAAANACAA ANGAGTTTTA 
    AAAAANTANT CCCAAAAAAN NANTTTNCTA AATCCAATTT TAANGGGGAA 
    ATNTTTTNAA TANCTNGGAT N

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2905480 [Map]; Strand: c
      • AT1G09020.1 - [+] show detail - homolog of yeast sucrose nonfermenting 4
        Distance: -665; Region: promoter
    Flanking Genome Sequence: 52-0555-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    AGGGAGACAA TCGTGTTGTC TTCCAAGTTG ACATTATTTG AGGGAGAGGA 
    GACTTCATGT TTGAACCCTA GGCATGCAAT TACATTTTAT AGTAGATTTA 
    GCCTTAGAAA GACCTGTAAA TTAGGGCTAA AAGCCTAAAA CCAAAACACG 
    ACCTTGAAGA AAAAAAGAGT TCGGTTTCTA ATTAGTTTTA TAAACTCTAA 
    ATAATCGAAG TGATGTAACN TTTTATTTGT TGTGAGTATA TATTTTTAAG 
    TTGGATTTGA ACTTCCTTAT AGACATGACT TTATATAAGT GTATATATCT 
    CGCTCTTACT CTAATGTTGT TTATCTTTTT CCTCAAAACG TATATAAGTC 
    CCCCGGCCCT CTCTTTCAGT ACTATTCTAT ATATACACTT ACTCTATCTG 
    TCGGAAAACA GCAAATGAGA AAGACATTTG TAAACAATGG TCATTTTGGC 
    TTGTTGGTTA TTGGGCAGCA TTCACGGTCG CTGGCTAGTA TGGACAATTG 
    GATATATATA CTCCTTTAAT GGTCATAACT TTCATCTCAA AATCTTGATC 
    GCTATATTTG GGCATTGAAA AACAGGCCAA CAAAGTTTTT TTTTTTTATN 
    TNATAAGGGC TTTTTTNANT TTTGGAAAAG TNTTNATTGG GTTCCATNTG 
    GNNANAACAT TTTTGGCTTT NGNCCTAAAN ATCCGAAACT CCTTNNNNGA 
    AATTNNGGNT NTGNNTANNA NNTTGGGCTN GGGAACA

AT1G09020.1

Model type
Protein coding
Short Description
homolog of yeast sucrose nonfermenting 4
Curator Summary
putative activator subunit of SNF1-related protein kinase
Computational Description
homolog of yeast sucrose nonfermenting 4 (SNF4); CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase-related (TAIR:AT1G27070.1); Has 1379 Blast hits to 1368 proteins in 272 species: Archae - 14; Bacteria - 104; Metazoa - 613; Fungi - 295; Plants - 229; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
Link
InterPro Scan - TAIR