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52-0460-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 78832 [Map]; Strand: c
      • AT2G01080.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0460-1 - 5-prime edge 
    CGTGGATGAA TGATCCTAGA AAAAATATCA AAAGTGAAGG AGAAGCAAAG 
    GCCATAAGGA AAGCAGAGTG GGACAGACAA GAGCATGACT AGTGGTGTAA 
    GGAATCTATT TAACTTAGCA ACCACTTTTT TTTTTTTTCC CCCCNTTTTT 
    TNNCNAAAAA NGGGGGGAAT TTTTTTTNNA AAANGNNTNN NCCCNNNCNN 
    GNTNGGNCNA AANCNTNNNC CNNNNAAANG GGGGGGAAAA AAAAGGGGNA 
    AAAACCCNNN CCCCCCGGGN AANAAAANTT NNNNNCNGGG TTTTTNCCCC 
    CCCCTTNNCC GGGGNNNGGN NCCCCCCNNG GGNNTTTAAN GNAANCTTTT 
    TTANAAAAAN NGGGGGGGGG GNNTNCNNAA AAANNNCCNT TNCCNNNGNA 
    AAGGGGGNCC NAAANTTTTT TTTNNTNGGN CCCNNCNGGG NAAAANNNNG 
    GCCCCGGCCC CCCCCCANGG GGNTNCCTTT TTNNNNNANC CGNAAANNGG 
    NCNCCCCCCC CCCTTTTNCC CCCNTTTTTN GGNTNNCNGG GGGNAAAAAN 
    CNNCCCNTTN NNAAGNAAAA NGNNGNCGGN GNNNGNNNNN CNACCCGGGN 
    CCGNANCGGN NNNNNTTNTN TNNA

AT2G01080.1

Model type
Protein coding
Short Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G27080.2); Has 675 Blast hits to 674 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 673; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR