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Mutant Lines
52-0452-1

52-0452-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 3964183 [Map]; Strand: w
- AT5G12250.1 - [+] show detail - beta-6 tubulin
  Distance: -661; Region: promoter

CTTCTCCNNT ACGGNCGGGA AANTANCTCA ANTCTATGCN TANACTGTAT 
TNTGGTCCAT CAGATCTATA CNANAGAGTT GAANAAAAAA GTTGATGCAT 
ATTACCGTAG TTACGACGAT AATGTAAAAC ACACGCATTG GATACTCNCG 
TTTNTNTTTT NCTACTGATG CTAAATTGCT ACTTTGAAAT CTTTAAAATA 
TTCTATAAGT TCTTACATCT GTGNTTCTCC TCTA

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 3964114 [Map]; Strand: w
  - AT5G12250.1 - [+] show detail - beta-6 tubulin
    Distance: -592; Region: promoter
Flanking Genome Sequence: 52-0452-1 - 3-prime edge
```
AATTGAAAAC AGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT 
GCATGCAAAA GTAAGATTTA ATATATATTT TACGAAAGTA ACTAAACTTA 
ACTAACTAGT TAATATAGGT ACGAAATAAA CCATTAAGAA TT
```

AT5G12250.1

Model type: Protein coding
Short Description: beta-6 tubulin
Curator Summary: Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.
Computational Description: beta-6 tubulin (TUB6); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress, response to cold; LOCATED IN: microtubule cytoskeleton, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR