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52-0252-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1152226 [Map]; Strand: c
      • AT3G04340.1 - [+] show detail - FtsH extracellular protease family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0252-1 - 5-prime edge 
    CCTATAGCTG AGATTTTGGT TGCCCTTTAA TGAGGATATT TTAACAGTTG 
    ATTGTCATAA GCTCATCTTT TTGCAAGATT TCTCTTTGCA TTCATCTTAT 
    TGCGTGCACT TCTAGCNGGT GATGGTAATG TTGTATCTTT TACTTGTTAG 
    ATTACCAATT ATCTTGTTTG TACTCCTGCA CCTAGTCTAA CTGTATCTTT 
    TTGTTGGCTT TTATATATGT TTTTAACATG TCTATGCTGT TTTTCCTGTC 
    GACATAAATG TTTCATGTTT CACTTACAAG ATCAATTGAT TTTCTGGTTG 
    TAGTGTTCCT GAAAGCTCCA TTACAAAACT CTCGAGGTCT GAGATTAAGC 
    AGGAATTAGT GAACGCTCAA AGAAAGCACT TGGAACAAAT GATACTGCCC 
    AATGTTTTGG AACTAGAGGA GGTTGATCCC TTTTTCGATC GTGACTCAGT 
    GGATTTTTCT CTACGCATCA AAAAACGCCT TGAGGAATCA AAAAAGCTGC 
    AGAGAGATCT TCAGAATCGT ATCAGAAAAC GTATGAAAAA GTTTGGTGAA 
    GAAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1152342 [Map]; Strand: c
      • AT3G04340.1 - [+] show detail - FtsH extracellular protease family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0252-1 - 3-prime edge 
    GCTATAGGTA AGGTAGAATA ATATTATATC TGCTAAAATC ATGGCTAGAG 
    ATATCACCTT TCAAAACTTT TTTGATTCAA TTCTCGGTTG AAGCTCTTAA 
    CCAACTCTAC ACACTCTCTT TCAATGAAAA TAAGCTCCCT AACCCCAAAA 
    CTCAATGTTG TTGTCTCTTT CTTTAAAATG ATATCATCAA TCTCATCTAT 
    TCTTTCCCAT ATCTTATTGT ACTCGCTCTC CATAATATCC ACACTCTCTT 
    CCAGTTTCTC CATTTTCTCC CTAGCACCTT TTCTCAACAG TTTTTCACTC 
    TGTTTCTTCA AACTTAGGGC CTCATCTACA ATTTTATCAG CTCGTTTCAT 
    TAACAAATCT CTCTCCTTCC TCAACCGCCT CATATCACGA TATAACCCAC 
    TCATTATCTC CTTCTGCAGT TTCTCCTTCT CCACCTTAAC TGCATCCAAA 
    GCCGCTCCCA CTTCAGCAAC CTCTCCATTT TCCTTTCTAA CTATCTCAAT 
    AGTCTTCAGT AAAACCGAGA CTGTCTCCAA CAATCTCCGA GTATAATCCG 
    AGAACTCATG ATCAACTGCT TTCAAAACCA CCTCTTTCTC TCTCACTCTC 
    TCTTTCTTTT TCTTCCAAAT AACATCACTG ACGAAAGGCA CAGCTAAAGC 
    TGGAGCTTGA AAAGAGCGAA TCGGAGAAAG TCCAATTGCA ATACAAAACA 
    AGGCGTAAAC TAGAGGCTTG GTACAAACTG TATTACGCTC T

AT3G04340.1

Model type
Protein coding
Short Description
FtsH extracellular protease family
Computational Description
embryo defective 2458 (emb2458); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 32899 Blast hits to 29484 proteins in 3073 species: Archae - 1598; Bacteria - 9893; Metazoa - 6215; Fungi - 3644; Plants - 2880; Viruses - 25; Other Eukaryotes - 8644 (source: NCBI BLink).
Link
InterPro Scan - TAIR