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52-0250-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1152226 [Map]; Strand: c
      • AT3G04340.1 - [+] show detail - FtsH extracellular protease family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0250-1 - 5-prime edge 
    CCTATAGCTG AGATTTTGGT TGCCCTTTAA TGAGGATATT TTAACAGTTG 
    ATTGTCATAA GCTCATCTTT TTGCAAGATT TCTCTTTGCA TTCATCTTAT 
    TGCGTGCACT TCTAGCGGTG ATGGTAATGT TGTATCTTTT ACTTGTTAGA 
    TTACCAATTA TCTTGTTTGT ACTCCTGCAC CTAGTCTAAC TGTATCTTTT 
    TGTTGGCTTT TATATATGTT TTTAACATGT CTATGCTGTT TTTCCTGTCG 
    ACATAAATGT TTCATGTTTC ACTTACAAGA TCAATTGATT TTCTGGTTGT 
    AGTGTTCCTG AAAGCTCCAT TACAAAACTC TCGAAGTCTG AGATTAANCA 
    GGAATTAGTG AACGCTCAAA GAAAGCACTT GGAACAAATG ATACTGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3964916 [Map]; Strand: w
      • AT5G12250.1 - [+] show detail - beta-6 tubulin
        Distance: -1394; Region: intergenic
      • AT5G12260.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: glycosyltransferase family protei...
        Distance: -1449; Region: intergenic
    Flanking Genome Sequence: 52-0250-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATA 
    GGTAGGGATT GGAATTTAGC AAAAAACTTT GTAGGTATGA GAAACTACTG 
    GAGCAAGAAA CTACGAGTAG AGAAAGTTAG AATTTAAGTC AGGTGAGCTG 
    TTGGCATGTC ACATGGGACG CAATGTGGAT TTCATGTGCA TTGTTCTTTT 
    TATATATCTC TACATCTCAT TCTGTCGCTA TCCGATTTCC GATCCACAAG 
    CTCTACAAGA CCAACACATT CTTGTTTTTG TACCCTTCTA ATTTCTCATA 
    TTTACAGCTA TATGCTGTTC TTAGCGTAAT TTATTTATCA CGTCTTGTTT 
    ATGATCTAAA TGATGGTGAT ATAAGGGCGA CATTGGTTTT GTTATTGATA 
    TCATTAGTAG TGCTTTTGGT TTCGGGTTTT CTTTTGCATT GTTATAGAAA 
    GTAGAAACGT AAGCATGATT AATGTTCCAT GGAAAATTTA GTACTAAGCG 
    AAACCATCGA AACATCACTT TTTTATTGTT ATACAAGCAA CGACAAAGTT 
    GAGAAAACAA TATTTAAGTT ATCCGATTAT TAGTTTAGAT TTTCCGAATA 
    GCAAACTGAT ATATTTATTG ATTGACAGTA GATCGACAGA TGTAAGAACT 
    TATAGAATAT TTTAAAGATT TCAAAGTAGC AATTTAGCAT CAGTAGTTAA 
    ATCTAAACGA GAGTATCCAA TGCGTGTGTT TTACATTATC GTCGTAACTA 
    CGGTAATATG CATCAACTTT TTTCT

AT3G04340.1

Model type
Protein coding
Short Description
FtsH extracellular protease family
Computational Description
embryo defective 2458 (emb2458); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 32899 Blast hits to 29484 proteins in 3073 species: Archae - 1598; Bacteria - 9893; Metazoa - 6215; Fungi - 3644; Plants - 2880; Viruses - 25; Other Eukaryotes - 8644 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G12250.1

Model type
Protein coding
Short Description
beta-6 tubulin
Curator Summary
Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.
Computational Description
beta-6 tubulin (TUB6); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress, response to cold; LOCATED IN: microtubule cytoskeleton, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G12260.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR