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52-0246-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3964987 [Map]; Strand: w
      • AT5G12250.1 - [+] show detail - beta-6 tubulin
        Distance: -1465; Region: intergenic
      • AT5G12260.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: glycosyltransferase family protei...
        Distance: -1378; Region: intergenic
    Flanking Genome Sequence: 52-0246-1 - 5-prime edge 
    ACCTACAAAG TTTGTCAGAG TTAATGTCGT TATAATATCT TCTTAATTTA 
    TTTTTTTCCC ACAAGTTCTT GTAAATACAA AAATTGAATA TCTTGTAGTA 
    TAAGTATATA TCAAGTGAAG TTTACTCTTT TTGTAAGTAG TAGTATTATT 
    TACGTGATTA ATATTATAAT TTGTTTCTAT GCAATAAGTC TTGACTCTTT 
    CAAATAAATC CTCTCACTTG ATCTGTACGA ATTTTCTGGT ATTTCTATGT 
    CTGTGAATAT TCATAACTTT TTGTTATGGT TAACCGAGGA TGAGCGATGT 
    CCAAAAGAGA TTAGTTGAGT GCTCTTTGAT GATGANANAC TATGAAATAT 
    AAACACATCT CTCTTTGAAG ATTATTGTTC

AT5G12250.1

Model type
Protein coding
Short Description
beta-6 tubulin
Curator Summary
Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.
Computational Description
beta-6 tubulin (TUB6); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress, response to cold; LOCATED IN: microtubule cytoskeleton, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G12260.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR