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Mutant Lines
52-0098-1

52-0098-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 2786345 [Map]; Strand: w
  - AT5G08600.2 - [+] show detail - U3 ribonucleoprotein (Utp) family protein
    Distance: 0; Region: exon1 (CDS)
  - AT5G08600.1 - [+] show detail - U3 ribonucleoprotein (Utp) family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 52-0098-1 - 5-prime edge
```
GCAAGTTTCA AAACAGAGAC AGTCATGGGA GGAGGAGAGA AGAGGAAATC 
TAGTTTCAAA AACCTAGCTA ATGCAAAGAA GAGGAGAACA GGACCTCACT 
TACCTAGCTC AATACTCAAG ACCATTGCGA ATGAGAAACG TCCTTTGAAC 
TCTGACGAAG GAGACGATGA GATCGATTCT GCTTACGGTG ATTTTTACGA 
GTACGAAGAA GGTGTGCCTG AAGAGGAATC TAGGAAAAAC AACCGCTACG 
AACGCGTCGT TAACTACGAA TT
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 2813297 [Map]; Strand: c
- AT5G08650.1 - [+] show detail - Small GTP-binding protein
  Distance: -33; Region: promoter
- AT5G08660.1 - [+] show detail - Protein of unknown function (DUF668)
  Distance: -790; Region: promoter

TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TACAGACTAT 
GTAACTGGGC CACTGTATCC AATTGGGCCT GTCCATCGGA TTCTAACCCA 
CCCGACCCGA TTCGATCCAA ATCTGTTTTC TTAAAATAAC GAATTTGTTT 
TGTGTGAATT AAACCGAAAT TAGACCACAA ATTTAATGAA ACNTGAACAA 
GATCAAATAA ATTGATTTTA AATCAGATAA TTCTAAACCC AAAAATATTC 
GAAGTAGAAC ATCAAATGTC AAAAAACATA GAAATAAGCT

AT5G08600.1

Model type: Protein coding
Short Description: U3 ribonucleoprotein (Utp) family protein
Computational Description: U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT4G02400.1); Has 7611 Blast hits to 5651 proteins in 499 species: Archae - 10; Bacteria - 906; Metazoa - 2522; Fungi - 1145; Plants - 309; Viruses - 73; Other Eukaryotes - 2646 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G08600.2

Model type: Protein coding
Short Description: U3 ribonucleoprotein (Utp) family protein
Computational Description: U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT4G02400.1).
Link: InterPro Scan - TAIR

AT5G08650.1

Model type: Protein coding
Short Description: Small GTP-binding protein
Computational Description: Small GTP-binding protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), GTP-binding protein LepA, C-terminal (InterPro:IPR013842), Protein synthesis factor, GTP-binding (InterPro:IPR000795), GTP-binding protein LepA (InterPro:IPR006297), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Small GTP-binding protein (TAIR:AT5G39900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G08660.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF668)
Computational Description: Protein of unknown function (DUF668); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT1G34320.1); Has 342 Blast hits to 276 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 333; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR