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52-0097-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1128912 [Map]; Strand: c
      • AT4G02560.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -491; Region: promoter
      • AT4G02560.2 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -491; Region: promoter
      • AT4G02570.4 - [+] show detail - cullin 1
        Distance: 0; Region: intron2 (5UTR)
      • AT4G02570.2 - [+] show detail - cullin 1
        Distance: 0; Region: intron2 (5UTR)
      • AT4G02570.3 - [+] show detail - cullin 1
        Distance: 0; Region: intron2 (5UTR)
      • AT4G02570.1 - [+] show detail - cullin 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 52-0097-1 - 5-prime edge
    CTAACAATCT CGATCCCACA AAAATTCAAA TAAAAACCTA GAAAGACGAA 
    CAATCAACAG AATGATAAAA AAATCAACTG TCGTATGGAA CAAAACAAGC
    GAGAATCCGA CAGAAATAGT GATACCTCGA GATCTTAAAC CCTAATAATC
    AGAAAATCGC GTCGCCGTAC CCCAAACAGA CCCTGACGAT TACCGATTCC
    CGATTACACA GGATCGGCGA GAGCTGCTGC GATCGAAAAA GAAGCGAGAG
    AGAGAGAGAA TCAAAACCCT AAGAATCGTT CAGGAAAAAA GCGTAAAATA
    GAGAGAAAGA GAGACGAGAC CTATGAGAAG GGCGGTGAAA AGATATCTCA
    GGAAACAAAC TCGTTCTCTT CTATTCTATT ATTTTCAGGT CTTATAGATT
    TTAATTATTT TTATTTTATG TCAACTAATA TATTAGTATA ATATTAAACA
    AATTTAATTT CTTACCTTTT CAGAGATCTA CATCAAGACG CTGCGTTTTA
    TAATTTTTCT TTGTAAAGTA ACTTATTTAC TTTTATGCCC CTTTATTTTG
    CCTTCCTTAC TCAAACCCTA ACCCGAATCG GCTTTTTGAC AATCCGAAAT
    TAGGTAACCA TGTTCATTGA ATTTATCGTT TCAACACATT CGAATCACTG
    AGTCCTACGT TTCAGTTTAA TTCCCTGATG CACATTTTGA ATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1129028 [Map]; Strand: c
      • AT4G02560.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -607; Region: promoter
      • AT4G02560.2 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -607; Region: promoter
      • AT4G02570.4 - [+] show detail - cullin 1
        Distance: 0; Region: intron2 (5UTR)
      • AT4G02570.2 - [+] show detail - cullin 1
        Distance: 0; Region: intron2 (5UTR)
      • AT4G02570.3 - [+] show detail - cullin 1
        Distance: 0; Region: intron2 (5UTR)
      • AT4G02570.1 - [+] show detail - cullin 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 52-0097-1 - 3-prime edge
    ATTGTTAGGG TTACGTCGGA GTCTCTGGAT TGCGTTTCTA CTGTGTAATT 
    TCGTGTTTAT CTCATGGATT GATTGTTTCT CGAGTATATT CTGATGCTTA
    TGTCCTCGTT TGCGCACAAT CTGATAGTTT GGGTTTGATT TGGGTGATAA
    TACTCGTTTC GCATTCGATA ATGTGGGTGT TAACGTGTTA TTATAACCTC
    TGAAGAATGA TAAATATTGT TGACTCTCTC GCTTCAGTCA TTTCATTGTG
    TTGCTTAATA CTGCTGTTCT AAATTTTGGT TTTCTCCTTG TTCTTTGGTT
    AACTTAGGTT GAGGAGAGCT TGAAAAGTTG TTTGTCAACA TGGAGCGCAA
    GACTATTGAC TTGGAGCAAG GATGGGACTA TATGCAGACT GGAATTACTA
    AGCTGAAACG GATTCTGGAA GGATTGAATG AGCCAGCATT TGACTCTGAG
    CAATATATGA TGCTTTACAC GTAGGTTTTA TACGTGTTTA TTACCTTATA
    TAGCGGTTTG GCTGTTTGTC CTGATACTTA TGATGGGGAA TTTATTTGAT
    TCTCAGGACT ATCTACAACA TGTGCACCCA GAAACCTCCT CATGATTACT
    CACAGCAGCT TTATGACAAG TATCCGGGAA GCATTTGAGG AATATATTAA
    CTCAACAGTG AGTCTGATTG ATATTTANTT TCCTTTCTTA TAAACNTNTC
    GTTTTACTAC CTCTGAATTT AAGATGCCAC TTTTGTGCAT GGTTTC

AT4G02560.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
Encodes a nuclear localized protein with similarity to transcriptional regulators. Recessive mutants are late flowering. Expression of LFY is reduced in LD mutants.
Computational Description
luminidependens (LD); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); Has 1085 Blast hits to 929 proteins in 132 species: Archae - 0; Bacteria - 17; Metazoa - 322; Fungi - 72; Plants - 440; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02560.2

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
Encodes a nuclear localized protein with similarity to transcriptional regulators. Recessive mutants are late flowering. Expression of LFY is reduced in LD mutants.
Computational Description
luminidependens (LD); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287).
Link
InterPro Scan - TAIR

AT4G02570.1

Model type
Protein coding
Short Description
cullin 1
Curator Summary
Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.
Computational Description
cullin 1 (CUL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin homology (InterPro:IPR016158), Cullin, N-terminal (InterPro:IPR001373), Cullin, conserved site (InterPro:IPR016157), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1); Has 2243 Blast hits to 2199 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 958; Fungi - 500; Plants - 373; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02570.2

Model type
Protein coding
Short Description
cullin 1
Curator Summary
Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.
Computational Description
cullin 1 (CUL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin homology (InterPro:IPR016158), Cullin, N-terminal (InterPro:IPR001373), Cullin, conserved site (InterPro:IPR016157), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02570.3

Model type
Protein coding
Short Description
cullin 1
Curator Summary
Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.
Computational Description
cullin 1 (CUL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin homology (InterPro:IPR016158), Cullin, N-terminal (InterPro:IPR001373), Cullin, conserved site (InterPro:IPR016157), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02570.4

Model type
Protein coding
Short Description
cullin 1
Curator Summary
Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.
Computational Description
cullin 1 (CUL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, conserved site (InterPro:IPR016157), Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1).
Link
InterPro Scan - TAIR