1. Home
  2. Mutant Lines
  3. 16-2501-1

16-2501-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 375896 [Map]; Strand: w
      • AT5G01970.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -942; Region: promoter
      • AT5G01980.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 16-2501-1 - 5-prime edge 
    CNTGATAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCT ACGTGATGAC CTGCGAACTA GCTCCCATAC 
    CACTCCAAGC GGCTCGACAA GATGGAGACT CTTCTCAGAA TCTGAAAGTG 
    ATGATTTTGA CAACTTTGGC GAAACCGAAT CAAACGCTAG CTTTAGCCTC 
    TACAGATTTC CCCATGCTGA TAACGATACC ATTTCTTTTA GTGCTTACGG 
    TGGAGAGTCT GATGCTTCCA CGGACAGGCA TGCCGATATC TTTGTTCAAC 
    CAGATGACAG GAGCGACATT GACTTTGACA CTGATATAGA CCCGATGCGC 
    GCTGGTCTTA ACCAGTGGAA CTCAGACGAA GAAGACAGGG AATGGGAGGA 
    AGGAGCGGGT CCTTCTGGGG TTGCAGGAAC ACGCTATAGA AACTATTTGG 
    CAAGTCCAAG TGAGAGCTAC AGCTCCATGA CTCGGTTTGA TTCACCTGAG 
    TTAGAGAGAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 375891 [Map]; Strand: w
      • AT5G01970.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -937; Region: promoter
      • AT5G01980.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 16-2501-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CTTCCTCACT AGCTTGAACC GTTGAAAGGC TTTGTCTTGC AATGCTTATC 
    AAGTGTGTGA ATTGTTGGGA GGAAAGATCA CCGACACCGA CAGACTCAGA 
    GCTGTCGTGC CTAGTTGTTC TTCTCCTCCT CCTCATCCTC CTCCTCCTAA 
    TTGTCTGCCG CCGAGCCAAG GGAGGCGCGG GAGTGCCGAA ATCTTCAAGC 
    AACAAAAACT TACAGTCGAC ACATAAGCTG AAGATTTCAA GATCATCGGA 
    AGCAGATTGA ACGACTCTTC CGCACAGATT ACAGGCGGAC GATGGGATTG 
    AATTGCTGCT GATATCCATG GGATGACCAT TAGAAGGTCC TTGTGATTCC 
    ATCGGATC

AT5G01970.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01980.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G08139.1); Has 7827 Blast hits to 7813 proteins in 270 species: Archae - 0; Bacteria - 9; Metazoa - 2445; Fungi - 565; Plants - 3731; Viruses - 72; Other Eukaryotes - 1005 (source: NCBI BLink).
Link
InterPro Scan - TAIR